Factsheet for HORVU7Hr1G054380.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G261800.1	Wheat	plastid	89.47	97.25
TraesCS7A01G260800.2	Wheat	plastid	89.47	97.25
TraesCS7B01G158800.1	Wheat	plastid	89.08	96.82
Os08t0532200-01	Rice	plastid	84.21	90.38
KXG22248	Sorghum	plastid	83.24	90.27
Zm00001d038547_P001	Maize	plastid	82.85	89.66
TraesCS7D01G262000.1	Wheat	mitochondrion	56.53	87.35
HORVU7Hr1G054360.1	Barley	plastid	35.09	85.31
GSMUA_Achr6P07940_001	Banana	plastid	74.07	80.17
KRH51376	Soybean	plastid	70.37	77.47
CDY62883	Canola	plastid	70.76	76.74
KRH60678	Soybean	nucleus	70.18	76.6
CDY41519	Canola	plastid	70.57	76.53
Bra035836.1-P	Field mustard	plastid	70.37	76.32
Bra038646.1-P	Field mustard	plastid	70.37	76.32
AT3G48730.1	Thale cress	plastid	70.18	76.27
VIT_17s0000g00900.t01	Wine grape	plastid	69.98	75.9
CDX81186	Canola	plastid	69.98	75.9
CDY16715	Canola	plastid	69.98	75.9
AT5G63570.1	Thale cress	plastid	69.98	75.74
PGSC0003DMT400082447	Potato	cytosol	70.96	75.68
Solyc04g009200.2.1	Tomato	plastid	70.96	75.52
KRH17479	Soybean	plastid	48.15	59.52
HORVU5Hr1G092960.5	Barley	cytosol	20.86	22.62
HORVU1Hr1G015560.5	Barley	plastid	21.05	21.09
HORVU4Hr1G075360.5	Barley	mitochondrion	19.49	20.88
HORVU1Hr1G070220.2	Barley	mitochondrion	19.1	19.84
HORVU2Hr1G098880.1	Barley	mitochondrion	18.91	18.98
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	20.47	18.72

Protein Annotations

KEGG:00860+5.4.3.8	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4	UniProt:A0A287WK03
InterPro:Aminotrans_3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006782	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483
GO:GO:0009058	GO:GO:0009536	GO:GO:0009987	GO:GO:0015995	GO:GO:0016740	GO:GO:0030170
GO:GO:0033014	GO:GO:0042286	EnsemblPlantsGene:HORVU7Hr1G054380	EnsemblPlants:HORVU7Hr1G054380.1	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00375	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR43713	PANTHER:PTHR43713:SF2	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00713	UniParc:UPI000B46EFCB	SEG:seg

Description

No Description!

Coordinates

chrchr7H:+:216784253..216786999

Molecular Weight (calculated)

54466.4 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.024

Length

513 amino acids

Sequence
(BLAST)

001: IFSFSREKEP GPSSQDPIPP NPFSYPLLIF SPHPTTSREK EGSIMAGAAA AVASGISIRP VAAPKISRAP RSRSVVRAAV SIDEKAYTVQ KSEEIFNAAK
101: ELMPGGVNSP VRAFKSVGGQ PIVFDSVKGS HMWDVDGNEY IDYVGSWGPA IIGHADDKVN AALIETLKKG TSFGAPCALE NVLAQMVISA VPSIEMVRFV
201: NSGTEACMGA LRLVRAFTGR EKILKFEGCY HGHADSFLVK AGSGVATLGL PDSPGVPKGA TVGTLTAPYN DADAVKKLFE DNKGEIAAVF LEPVVGNAGF
301: IPPQPAFLNA LREVTKQDGA LLVFDEVMTG FRLAYGGAQE YFGITPDVTT LGKIIGGGLP VGAYGGRKDI MEMVAPAGPM YQAGTLSGNP LAMTAGIHTL
401: KRLMEPGTYE YLDKVTGELV RGILDVGAKT GHEMCGGHIR GMFGFFFAGG PVHNFDDAKK SDTAKFGRFH RGMLEEGVYL APSQFEAGFT SLAHTTQDIE
501: KTVEAAEKVL RWI

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.