CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	KRH42483	AT2G01950.1	19000166
AT5G63570.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60678	Soybean	nucleus	97.21	96.38
VIT_17s0000g00900.t01	Wine grape	plastid	81.97	80.76
AT3G48730.1	Thale cress	plastid	78.97	77.97
CDY16715	Canola	plastid	78.76	77.59
CDY41519	Canola	plastid	78.76	77.59
CDY62883	Canola	plastid	78.76	77.59
Zm00001d038547_P001	Maize	plastid	78.76	77.43
Bra035836.1-P	Field mustard	plastid	78.54	77.38
Bra038646.1-P	Field mustard	plastid	78.54	77.38
KXG22248	Sorghum	plastid	78.54	77.38
CDX81186	Canola	plastid	78.33	77.17
AT5G63570.1	Thale cress	plastid	78.33	77.0
TraesCS7D01G261800.1	Wheat	plastid	77.9	76.91
TraesCS7A01G260800.2	Wheat	plastid	77.68	76.69
TraesCS7B01G158800.1	Wheat	plastid	77.25	76.27
Os08t0532200-01	Rice	plastid	77.9	75.94
GSMUA_Achr6P07940_001	Banana	plastid	76.61	75.32
TraesCS7D01G262000.1	Wheat	mitochondrion	52.15	73.19
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	77.47	70.37
HORVU7Hr1G054360.1	Barley	plastid	30.9	68.25
KRH17479	Soybean	plastid	56.44	63.37
KRH58670	Soybean	mitochondrion	24.03	23.88
KRH42566	Soybean	mitochondrion	23.82	23.77
KRH45041	Soybean	extracellular, mitochondrion	7.51	23.49
KRH65497	Soybean	mitochondrion	22.32	21.89
KRH76075	Soybean	mitochondrion	22.1	21.68
KRH35638	Soybean	cytosol	21.46	21.6
KRH59427	Soybean	mitochondrion	22.1	21.59
KRH43286	Soybean	mitochondrion	21.89	21.47
KRH48868	Soybean	nucleus	21.46	21.41
KRH00394	Soybean	mitochondrion	21.03	20.33
KRH04754	Soybean	cytosol	5.79	19.85
KRH24110	Soybean	mitochondrion	21.67	19.69
KRH31231	Soybean	mitochondrion	19.96	19.66
KRH29085	Soybean	cytosol	21.24	18.68
KRG97644	Soybean	mitochondrion	13.73	16.45

Protein Annotations

KEGG:00860+5.4.3.8	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	EntrezGene:547795	MapMan:7.12.1.4
UniProt:A0A0R0J9J2	ProteinID:AAC48996.1	InterPro:Aminotrans_3	EnsemblPlantsGene:GLYMA_06G002900	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006779
GO:GO:0006782	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015995	GO:GO:0016740	GO:GO:0016853	GO:GO:0030170
GO:GO:0033014	GO:GO:0042286	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH51376	ProteinID:KRH51376
ProteinID:KRH51376.1	EMBL:L12453	HAMAP:MF_00375	UniProt:P45621	PFAM:PF00202	ScanProsite:PS00600
PANTHER:PTHR43713	PANTHER:PTHR43713:SF2	MetaCyc:PWY-5188	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	TIGRFAMs:TIGR00713	UniParc:UPI000012BB91	SEG:seg	:	:

Description

GSA1hypothetical protein

Coordinates

chr6:-:233065..235274

Molecular Weight (calculated)

49648.7 Da

IEP (calculated)

5.735

GRAVY (calculated)

0.028

Length

466 amino acids

Sequence
(BLAST)

001: MAVSAITGAR LTLGMSLSSS TRSRTVAMAV SIDPKTDNKL TLTKSEEAFA AAKELMPGGV NSPVRAFKSV GGQPIVIDSV KGSRMWDIDG NEYIDYVGSW
101: GPAIIGHADD QVLAALGETM KKGTSFGAPC LLENTLAELV IDAVPSIEMV RFVNSGTEAC MGALRLARAY TGREKIIKFE GCYHGHADPF LVKAGSGVAT
201: LGLPDSPGVP KAATFETLTA PYNDTEAIEK LFEANKGEIA AVFLEPVVGN AGFIVPKPDF HSFLRKITKE NNTLLVFDEV MTGFRLSYGG AQEYFGITPD
301: ITTLGKIIGG GLPVGAYGGR RDIMEKVAPA GPMYQAGTLS GNPLAMTAGI ETLQRIKEPG TYEYLDKITG ELVEGIIEAG KRAGHAICGG HIRGMFGFFF
401: TEGPVYNFAD AKKSDTAKFA RFFWGMLAEG VYLAPSQFEA GFTSLAHTSD DIKKTIAAAE KVFREI

Best Arabidopsis Sequence Match ( AT3G48730.1 )
(BLAST)

001: MAATLTGSGI ALGFSCSAKF SKRASSSSNR RCIKMSVSVE EKTKKFTLQK SEEAFNAAKN LMPGGVNSPV RAFKSVGGQP VVMDSAKGSR IRDIDGNEYI
101: DYVGSWGPAI IGHADDEVLA ALAETMKKGT SFGAPCLLEN VLAEMVISAV PSIEMVRFVN SGTEACMGVL RLARAFTGKQ KFIKFEGCYH GHANSFLVKA
201: GSGVATLGLP DSPGVPKAAT SDTLTAPYND IAAVEKLFEA NKGEIAAIIL EPVVGNSGFI TPKPEFIEGI RRITKDNGAL LIFDEVMTGF RLAYGGAQEY
301: FGITPDLTTL GKIIGGGLPV GAYGGRRDIM EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLSQPGTYEY LDKITKELTN GILEAGKKTG HAMCGGYISG
401: MFGFFFTEGP VYDFSDAKKS DTEKFGKFFR GMLEEGVYLA PSQFEAGFTS LAHTSEDIQF TIAAAEKVLS RL

Arabidopsis Description

GSA2Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42522]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.