Factsheet for TraesCS7D01G261800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G63570.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G63570.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G260800.2	Wheat	plastid	98.73	98.73
TraesCS7B01G158800.1	Wheat	plastid	97.88	97.88
Os08t0532200-01	Rice	plastid	92.37	91.21
KXG22248	Sorghum	plastid	90.25	90.06
Zm00001d038547_P001	Maize	plastid	90.04	89.66
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	97.25	89.47
TraesCS7D01G262000.1	Wheat	mitochondrion	62.08	88.25
HORVU7Hr1G054360.1	Barley	plastid	38.35	85.78
GSMUA_Achr6P07940_001	Banana	plastid	80.93	80.59
KRH51376	Soybean	plastid	76.91	77.9
CDY62883	Canola	plastid	77.54	77.38
CDY41519	Canola	plastid	77.33	77.17
KRH60678	Soybean	nucleus	76.69	77.02
Bra038646.1-P	Field mustard	plastid	77.12	76.96
Bra035836.1-P	Field mustard	plastid	77.12	76.96
VIT_17s0000g00900.t01	Wine grape	plastid	76.91	76.74
AT3G48730.1	Thale cress	plastid	76.69	76.69
CDX81186	Canola	plastid	76.69	76.53
CDY16715	Canola	plastid	76.69	76.53
AT5G63570.1	Thale cress	plastid	76.69	76.37
PGSC0003DMT400082447	Potato	cytosol	77.54	76.09
Solyc04g009200.2.1	Tomato	plastid	77.54	75.93
KRH17479	Soybean	plastid	52.33	59.52
TraesCS1D01G074600.1	Wheat	plastid	23.09	23.7
TraesCS5D01G384500.1	Wheat	mitochondrion	23.09	23.04
TraesCS4D01G170300.1	Wheat	mitochondrion	21.4	22.0
TraesCS1D01G292100.1	Wheat	mitochondrion	21.61	21.38
TraesCS4D01G286900.1	Wheat	mitochondrion	20.97	20.67
TraesCS7D01G341900.2	Wheat	mitochondrion	21.82	20.28
TraesCS2D01G418400.2	Wheat	mitochondrion	21.82	20.16

Protein Annotations

KEGG:00860+5.4.3.8	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4	InterPro:Aminotrans_3
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0033014
GO:GO:0042286	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00375	PFAM:PF00202	ScanProsite:PS00600
PANTHER:PTHR43713	PANTHER:PTHR43713:SF2	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
TIGRFAMs:TIGR00713	EnsemblPlantsGene:TraesCS7D01G261800	EnsemblPlants:TraesCS7D01G261800.1	TIGR:cd00610	SEG:seg	:

Description

No Description!

Coordinates

chr7D:+:238969619..238972235

Molecular Weight (calculated)

49651.8 Da

IEP (calculated)

6.519

GRAVY (calculated)

0.065

Length

472 amino acids

Sequence
(BLAST)

001: MAGAAAAAAA VASGISIRPV AAPKISRAPR SRSAVRAAVS IGEKAYTVQK SEEIFNAAKE LMPGGVNSPV RAFKSVGGQP IVFDSVKGSH MWDVDGNEYI
101: DYVGSWGPAI IGHADDEVNA ALIETLKKGT SFGAPCALEN VLAQMVISAV PSIEMVRFVN SGTEACMGAL RLVRAFTGRE KILKFEGCYH GHADSFLVKA
201: GSGVATLGLP DSPGVPKGAT VGTLTAPYND VEAVKKLFED NKGEIAAVFL EPVVGNAGFI PPQPAFLNAL REVTKQDGAL LVFDEVMTGF RLAYGGAQEY
301: FGITPDVTTL GKIIGGGLPV GAYGGRKEIM EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLMEPGTYEY LDKVTGELVQ GILDAGAKTG HEMCGGHIRG
401: MFGFFFAGGP VHNFDDAKKS DTAKFGRFHR GMLEEGVYLA PSQFEAGFTS LAHTTLDIEK TVEAAEKVLR RI

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.