Factsheet for GSMUA_Achr6P07940_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0532200-01	Rice	plastid	82.07	81.38
Zm00001d038547_P001	Maize	plastid	81.01	81.01
TraesCS7A01G260800.2	Wheat	plastid	80.59	80.93
TraesCS7D01G261800.1	Wheat	plastid	80.59	80.93
KXG22248	Sorghum	plastid	80.38	80.55
TraesCS7B01G158800.1	Wheat	plastid	79.96	80.3
VIT_17s0000g00900.t01	Wine grape	plastid	77.85	78.01
KRH51376	Soybean	plastid	75.32	76.61
CDY62883	Canola	plastid	76.16	76.32
CDY41519	Canola	plastid	76.16	76.32
Bra038646.1-P	Field mustard	plastid	75.95	76.11
CDX81186	Canola	plastid	75.74	75.9
Bra035836.1-P	Field mustard	plastid	75.74	75.9
Solyc04g009200.2.1	Tomato	plastid	77.0	75.73
PGSC0003DMT400082447	Potato	cytosol	76.79	75.68
AT3G48730.1	Thale cress	plastid	75.32	75.64
CDY16715	Canola	plastid	75.32	75.48
AT5G63570.1	Thale cress	plastid	75.32	75.32
KRH60678	Soybean	nucleus	74.47	75.11
HORVU7Hr1G054360.1	Barley	plastid	33.12	74.41
TraesCS7D01G262000.1	Wheat	mitochondrion	52.11	74.4
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	80.17	74.07
KRH17479	Soybean	plastid	51.69	59.04
GSMUA_Achr5P28220_001	Banana	cytosol	14.13	27.57
GSMUA_Achr11P...	Banana	cytosol	19.62	25.34
GSMUA_Achr5P08560_001	Banana	peroxisome	21.94	23.85
GSMUA_Achr9P04450_001	Banana	cytosol	19.83	23.44
GSMUA_Achr6P32610_001	Banana	mitochondrion	23.21	23.11
GSMUA_Achr10P...	Banana	peroxisome	19.83	22.27
GSMUA_Achr10P...	Banana	mitochondrion	22.15	22.15
GSMUA_Achr8P17090_001	Banana	peroxisome	20.89	22.15
GSMUA_Achr1P17230_001	Banana	peroxisome	10.13	21.24
GSMUA_Achr5P00340_001	Banana	mitochondrion	20.89	19.6

Protein Annotations

KEGG:00860+5.4.3.8	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4	InterPro:Aminotrans_3
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0033014	GO:GO:0042286
EnsemblPlantsGene:GSMUA_Achr6G07940_001	EnsemblPlants:GSMUA_Achr6P07940_001	EnsemblPlants:GSMUA_Achr6T07940_001	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0T543
HAMAP:MF_00375	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR43713	PANTHER:PTHR43713:SF2	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00713	UniParc:UPI0002951ECF	SEG:seg

Description

Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G07940_001]

Coordinates

chr6:+:5340701..5344703

Molecular Weight (calculated)

50508.9 Da

IEP (calculated)

6.520

GRAVY (calculated)

0.017

Length

474 amino acids

Sequence
(BLAST)

001: MAGLAGVGLS WRSSTPSLVP LTSTKPSCAG RRVSIAVRNA ISVEGKSYTL QKSEEIFNAA KELMPGGVNS PVRAFKSVGG QPIVFDSVKG SHMWDVDGNE
101: YIDYVGSWGP AIIGHADEKV NAALIEALKK GTSFGAPCVL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTG RPKIIKFEGC YHGHADPYLV
201: KAGSGVATLG LPDSPGVPKG ATIDTLTSPY NDLETIKSLF DTHKGEIAAV ILEPVVGNAG FITPKPDFLN GLREITKQDG ALLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKVIGGGL PVGAYGGRKD IMQMVAPAGP MYQAGTLSGN PLAMTAGIHT LRRLMEPGSY DYLEKISSDL VNGILDAGKR AGHEMCGGSI
401: RGMFGFFFTE GPVYNFQDAK MSDTAKFARF YRGMLEEGVY LAPSQFEAGF TSLAHTSKDI DQTVEAAERV FRRI

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.