CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	CDY03088	AT2G01950.1	19000166
AT5G63570.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16715	Canola	plastid	97.89	97.89
CDY62883	Canola	plastid	97.46	97.46
CDY41519	Canola	plastid	97.25	97.25
AT5G63570.1	Thale cress	plastid	95.56	95.36
PGSC0003DMT400082447	Potato	cytosol	82.45	81.08
VIT_17s0000g00900.t01	Wine grape	plastid	80.97	80.97
Solyc04g009200.2.1	Tomato	plastid	82.03	80.5
KRH51376	Soybean	plastid	77.17	78.33
KRH60678	Soybean	nucleus	77.17	77.66
KXG22248	Sorghum	plastid	77.38	77.38
Zm00001d038547_P001	Maize	plastid	77.38	77.22
TraesCS7D01G261800.1	Wheat	plastid	76.53	76.69
TraesCS7A01G260800.2	Wheat	plastid	76.53	76.69
GSMUA_Achr6P07940_001	Banana	plastid	75.9	75.74
Os08t0532200-01	Rice	plastid	76.53	75.73
TraesCS7B01G158800.1	Wheat	plastid	75.48	75.64
TraesCS7D01G262000.1	Wheat	mitochondrion	50.95	72.59
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	75.9	69.98
HORVU7Hr1G054360.1	Barley	plastid	30.44	68.25
CDX87325	Canola	mitochondrion	21.78	22.84
CDY61533	Canola	peroxisome	8.88	22.46
CDY39963	Canola	mitochondrion	21.35	22.39
CDY67620	Canola	mitochondrion, plastid	20.93	22.1
CDY37615	Canola	mitochondrion	20.93	22.1
CDY33459	Canola	mitochondrion	19.24	21.31
CDY14465	Canola	cytosol	18.82	20.94
CDX77642	Canola	mitochondrion	18.82	20.89
CDY41995	Canola	mitochondrion	20.93	20.8
CDY35151	Canola	mitochondrion	16.49	20.47
CDX90347	Canola	mitochondrion	20.51	20.38
CDY63451	Canola	mitochondrion	20.51	20.38
CDX73944	Canola	mitochondrion	20.08	20.21
CDY42643	Canola	mitochondrion	20.3	20.17
CDY54458	Canola	mitochondrion	19.87	19.83
CDY00650	Canola	mitochondrion	19.66	19.79
CDY00651	Canola	mitochondrion	19.66	19.79
CDY54421	Canola	mitochondrion	20.08	19.75
CDY18386	Canola	mitochondrion	9.73	19.74
CDY66720	Canola	mitochondrion	20.51	19.72
CDY39506	Canola	mitochondrion	20.08	18.77
CDY58748	Canola	mitochondrion	19.66	18.67
CDY61531	Canola	mitochondrion	7.82	17.62
CDY03236	Canola	cytosol	14.16	17.4
CDY37389	Canola	mitochondrion	18.39	17.4
CDY10619	Canola	mitochondrion	18.39	17.4
CDY10622	Canola	golgi	17.34	17.37
CDY68670	Canola	cytosol	15.86	16.82
CDY71561	Canola	mitochondrion	7.61	16.22
CDY10621	Canola	extracellular, plastid	7.4	14.83

Protein Annotations

KEGG:00860+5.4.3.8	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4	GO:A0A078CVM3
InterPro:Aminotrans_3	EnsemblPlants:CDX81186	ProteinID:CDX81186	ProteinID:CDX81186.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006779
GO:GO:0006782	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015995	GO:GO:0016740	GO:GO:0016853	GO:GO:0030170
GO:GO:0033014	GO:GO:0042286	EnsemblPlantsGene:GSBRNA2T00134647001	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00375
PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR43713	PANTHER:PTHR43713:SF2	MetaCyc:PWY-5188	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00713	UniPathway:UPA00251	UniParc:UPI0004EE6052
SEG:seg	:	:	:	:	:

Description

BnaC09g05970D

Coordinates

chrLK031824:+:27836..30415

Molecular Weight (calculated)

50364.7 Da

IEP (calculated)

7.138

GRAVY (calculated)

0.004

Length

473 amino acids

Sequence
(BLAST)

001: MSATLTGPGT ALGFSCSCKI SKRVSTSPSN RCSIKMSVSV DEKKKSFTLQ KSEEAFNAAK NLMPGGVNSP VRAFKSVGGQ PVLIDSVKGS KMWDIDGNEY
101: IDYVGSWGPA IIGHADDEVL AALAETMKKG TSFGAPCLLE NVLAEMVISA VPSIEMVRFV NSGTEACMGV LRLARAFTNK EKFIKFEGCY HGHANAFLVK
201: AGSGVATLGL PDSPGVPKAA TSDTLTAPYN DIEAVAKLFE AHKGEISAII LEPVVGNSGF ITPTPEFING LRQLSRDNGA LLIFDEVMTG FRLAYGGAQE
301: YFGITPDLTT LGKIIGGGLP VGAYGGRRDI MEMVAPAGPM YQAGTLSGNP LAMTAGIHTL KRLKQPGTYE YLDKITKQLT NGILEAGKKT GHAMCGGYIS
401: GMFGFFFTEG PVYNFADAKK SDTEKFGRFF RGMLEEGVYF APSQFEAGFT SLAHTTEDIQ FTIAAAERVL GRI

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.