CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87325	Canola	mitochondrion	97.34	97.34
Bra035168.1-P	Field mustard	mitochondrion	96.9	96.9
CDY67620	Canola	mitochondrion, plastid	92.46	93.08
CDY37615	Canola	mitochondrion	92.46	93.08
AT1G80600.1	Thale cress	plastid	91.35	90.15
GSMUA_Achr11P...	Banana	cytosol	59.65	73.3
GSMUA_Achr9P04450_001	Banana	cytosol	64.75	72.82
VIT_09s0002g08670.t01	Wine grape	plastid	71.4	69.55
PGSC0003DMT400058543	Potato	cytosol, plastid	69.18	68.27
Solyc08g080370.2.1	Tomato	plastid	69.4	68.04
KRH48868	Soybean	nucleus	69.84	67.45
KRH35638	Soybean	cytosol	68.07	66.31
Os05t0129100-00	Rice	plastid	47.67	65.95
GSMUA_Achr5P28220_001	Banana	cytosol	35.26	65.43
Os07t0461900-01	Rice	plastid	47.23	64.94
VIT_19s0027g01790.t01	Wine grape	plastid	66.96	64.67
CDY68670	Canola	cytosol	61.86	62.56
TraesCS1A01G072200.1	Wheat	plastid	61.86	61.05
TraesCS1B01G090600.1	Wheat	plastid	61.86	60.65
TraesCS1D01G074600.1	Wheat	plastid	61.64	60.43
EES17651	Sorghum	plastid	59.42	57.51
HORVU1Hr1G015560.5	Barley	plastid	62.31	54.88
Zm00001d035443_P001	Maize	plastid	59.65	54.34
CDY61533	Canola	peroxisome	12.86	31.02
CDY18386	Canola	mitochondrion	14.19	27.47
CDY33459	Canola	mitochondrion	25.94	27.4
CDY14465	Canola	cytosol	25.72	27.29
CDX77642	Canola	mitochondrion	25.72	27.23
CDY54458	Canola	mitochondrion	27.05	25.74
CDY35151	Canola	mitochondrion	21.73	25.72
CDX90347	Canola	mitochondrion	27.05	25.63
CDY54421	Canola	mitochondrion	27.27	25.57
CDY63451	Canola	mitochondrion	26.83	25.42
CDY42643	Canola	mitochondrion	26.61	25.21
CDY41995	Canola	mitochondrion	26.61	25.21
CDY66720	Canola	mitochondrion	27.05	24.8
CDX73944	Canola	mitochondrion	25.5	24.47
CDY00650	Canola	mitochondrion	25.5	24.47
CDY00651	Canola	mitochondrion	25.5	24.47
CDY10622	Canola	golgi	25.06	23.94
CDY03236	Canola	cytosol	20.4	23.9
CDY58748	Canola	mitochondrion	26.16	23.69
CDY39506	Canola	mitochondrion	26.39	23.52
CDY10619	Canola	mitochondrion	25.72	23.2
CDY37389	Canola	mitochondrion	25.72	23.2
CDY61531	Canola	mitochondrion	10.2	21.9
CDY62883	Canola	plastid	22.62	21.56
CDY16715	Canola	plastid	22.39	21.35
CDX81186	Canola	plastid	22.39	21.35
CDY41519	Canola	plastid	22.39	21.35
CDY71561	Canola	mitochondrion	9.98	20.27
CDY10621	Canola	extracellular, plastid	7.98	15.25

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.1.1.1.4	GO:A0A078HT85	UniProt:A0A078HT85	InterPro:AcOrn/SuccOrn_fam
InterPro:Aminotrans_3	EnsemblPlants:CDY39963	ProteinID:CDY39963	ProteinID:CDY39963.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006525	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009987
GO:GO:0016740	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00068845001	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_01107
PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF79	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00707	UniParc:UPI0004EDB4B4	SEG:seg

Description

BnaC06g40410DBnaC06g40410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT85]

Coordinates

chrLK032461:+:100775..102332

Molecular Weight (calculated)

48084.0 Da

IEP (calculated)

6.520

GRAVY (calculated)

0.169

Length

451 amino acids

Sequence
(BLAST)

001: MASLGQITLP RAPSLEISLL RLRFDRPIRT RIGFNGRIVS EQAQVSVKAS VSQKVIEEEA RVLVGTYARA PVVLSSGKGC KLMDAEGKEY LDCASGIAVN
101: ALGHGDPDWL QAVTDQAAVL AHVSNVYYTI PQIELAKRLV ASSFADRVFF CNSGTEANEA AIKFSRKFQR FTHPQDKDVA TGFIAFTNSF HGRTLGALAL
201: TSKEQYRTPF EPIMPGVTFL EYGNVQAATD LISSGKIAAV FVEPIQGEGG VYSATKEFLQ SLRSACDASG SLLVFDEVQC GLGRTGNLWA YEAFGVTPDI
301: MTVAKPLAGG LPIGAVLVTE KVAETIKYGD HGSTFAGNPL VCSAAIAVVD KVSKPSFLAS VSGKGLYFKE LLVKKLGGNS HVKEVRGEGL IIGVELDVPA
401: SPLVDACRDS GLLILTAGKG NVVRIVPPLI ISEEEIERAV EIMFQNLTAL G

Best Arabidopsis Sequence Match ( AT1G80600.1 )
(BLAST)

001: MASLSQITLP RAPSSEIGLL RRRLERPIIR TRIGFNGRIA SVLTNAGDQA VSVKASVSQK VIEEEAKVIV GTYARAPVVL SSGKGCKLFD PEGKEYLDCA
101: SGIAVNALGH GDPDWLRAVT EQAGVLAHVS NVYYTIPQIE LAKRLVASSF ADRVFFCNSG TEANEAAIKF SRKFQRFTHP EDKEVATGFI AFTNSFHGRT
201: LGALALTSKE QYRTPFEPIM PGVTFLEYGN IQAATDLIRS GKIAAVFVEP IQGEGGIYSA TKEFLQSLRS ACDAAGSLLV FDEVQCGLGR TGLMWAYEAF
301: GVTPDIMTVA KPLAGGLPIG AVLVTEKVAE TINYGDHGST FAGSPLVCSA AIAVMDKVSK PSFLSSVSNK GRYFRDLLVK KLGGNSHVKE VRGEGLIIGV
401: ELDVPASSLV DACRDSGLLI LTAGKGNVVR IVPPLVISEE EIERAVEIMS QNLTALD

Arabidopsis Description

WIN1Acetylornithine aminotransferase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M8M7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.