Factsheet for PGSC0003DMT400058543

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080370.2.1	Tomato	plastid	98.25	97.61
GSMUA_Achr11P...	Banana	cytosol	61.27	76.29
GSMUA_Achr9P04450_001	Banana	cytosol	66.08	75.31
VIT_19s0027g01790.t01	Wine grape	plastid	72.43	70.88
GSMUA_Achr5P28220_001	Banana	cytosol	36.98	69.55
CDY67620	Canola	mitochondrion, plastid	67.83	69.2
CDY39963	Canola	mitochondrion	68.27	69.18
KRH48868	Soybean	nucleus	70.68	69.16
Bra008453.1-P	Field mustard	plastid	67.61	68.97
CDY37615	Canola	mitochondrion	67.61	68.97
Bra035168.1-P	Field mustard	mitochondrion	68.05	68.96
AT1G80600.1	Thale cress	plastid	68.93	68.93
KRH35638	Soybean	cytosol	69.8	68.9
CDX87325	Canola	mitochondrion	67.83	68.74
Os05t0129100-00	Rice	plastid	48.14	67.48
Os07t0461900-01	Rice	plastid	47.7	66.46
TraesCS1A01G072200.1	Wheat	plastid	63.46	63.46
TraesCS1D01G074600.1	Wheat	plastid	63.46	63.04
TraesCS1B01G090600.1	Wheat	plastid	63.24	62.83
EES17651	Sorghum	plastid	63.02	61.8
HORVU1Hr1G015560.5	Barley	plastid	64.11	57.23
Zm00001d035443_P001	Maize	plastid	61.49	56.77
CDY68670	Canola	cytosol	50.55	51.79
Bra008457.1-P	Field mustard	cytosol, peroxisome, plastid	50.77	47.44
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	29.1	27.82
PGSC0003DMT400076803	Potato	cytosol, extracellular, mitochondrion	14.88	27.31
PGSC0003DMT400033328	Potato	extracellular	27.35	26.43
PGSC0003DMT400064961	Potato	cytosol	25.6	25.55
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	16.63	24.84
PGSC0003DMT400030683	Potato	mitochondrion	25.82	22.91
PGSC0003DMT400062372	Potato	plastid	24.95	22.09
PGSC0003DMT400082447	Potato	cytosol	21.44	20.37

Protein Annotations

EntrezGene:102578694	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.1.1.1.4	InterPro:AcOrn/SuccOrn_fam	InterPro:Aminotrans_3
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006525	GO:GO:0008150	GO:GO:0008152
GO:GO:0008483	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422
UniProt:M1C2U6	HAMAP:MF_01107	PFAM:PF00202	EnsemblPlantsGene:PGSC0003DMG400022742	PGSC:PGSC0003DMG400022742	EnsemblPlants:PGSC0003DMT400058543
PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF79	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00707	UniParc:UPI000294A5F6	RefSeq:XP_006358869.1	SEG:seg

Description

Acetylornithine aminotransferase, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400022742]

Coordinates

chr8:+:54049949..54053895

Molecular Weight (calculated)

48797.4 Da

IEP (calculated)

6.511

GRAVY (calculated)

0.072

Length

457 amino acids

Sequence
(BLAST)

001: MSSSSTFFLT NPFSSVSGST HLRRSFNNVR YGGGGGVRIA ASLNVEVQAP DLSKEVMDES NKVFVGTYAR APLVLSSGKG CKLYDIEGRE YLDLTSGIAV
101: NALGHGDPDW IRAVTQQANV LTHVSNLYYT LPQLELAKRL VANSFADRVF LSNSGTEANE AAIKFARKFQ RFSHPDEKQP PVEFIAFSNC FHGRTMGAVA
201: LTSKEYYRSP FEPVMPGVTF LEYGSVQAAK ELIQSGKIAA VFVEPIQGEG GIYSATQEFL QALRTACDSA GSLLVFDEVQ CGLGRTGHLW AHEAYGIYPD
301: IMTLAKPLAG GLPIGAVLVT ERVAAAINYG DHGSTFAGGP LVCNAAVAVL DKISGPGFLA SVTKKGQDFK ELLVKKLGGN SHVREVRGVG LIIGIDLDVP
401: ASPLVEACQQ SGLLVLTAGK GNVVRLVPPL TITEQELDHA AEILFNCLPV LDKTANN

Best Arabidopsis Sequence Match ( AT1G80600.1 )
(BLAST)

001: MASLSQITLP RAPSSEIGLL RRRLERPIIR TRIGFNGRIA SVLTNAGDQA VSVKASVSQK VIEEEAKVIV GTYARAPVVL SSGKGCKLFD PEGKEYLDCA
101: SGIAVNALGH GDPDWLRAVT EQAGVLAHVS NVYYTIPQIE LAKRLVASSF ADRVFFCNSG TEANEAAIKF SRKFQRFTHP EDKEVATGFI AFTNSFHGRT
201: LGALALTSKE QYRTPFEPIM PGVTFLEYGN IQAATDLIRS GKIAAVFVEP IQGEGGIYSA TKEFLQSLRS ACDAAGSLLV FDEVQCGLGR TGLMWAYEAF
301: GVTPDIMTVA KPLAGGLPIG AVLVTEKVAE TINYGDHGST FAGSPLVCSA AIAVMDKVSK PSFLSSVSNK GRYFRDLLVK KLGGNSHVKE VRGEGLIIGV
401: ELDVPASSLV DACRDSGLLI LTAGKGNVVR IVPPLVISEE EIERAVEIMS QNLTALD

Arabidopsis Description

WIN1Acetylornithine aminotransferase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M8M7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.