Factsheet for VIT_19s0027g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	62.95	80.11
GSMUA_Achr9P04450_001	Banana	cytosol	68.31	79.55
VIT_09s0002g08670.t01	Wine grape	plastid	74.95	75.59
PGSC0003DMT400058543	Potato	cytosol, plastid	70.88	72.43
GSMUA_Achr5P28220_001	Banana	cytosol	37.69	72.43
Solyc08g080370.2.1	Tomato	plastid	71.09	72.17
KRH48868	Soybean	nucleus	70.45	70.45
KRH35638	Soybean	cytosol	69.81	70.41
Os05t0129100-00	Rice	plastid	47.75	68.4
Bra008453.1-P	Field mustard	plastid	65.1	67.86
CDY67620	Canola	mitochondrion, plastid	65.1	67.86
CDY37615	Canola	mitochondrion	65.1	67.86
Bra035168.1-P	Field mustard	mitochondrion	64.88	67.18
AT1G80600.1	Thale cress	plastid	65.74	67.18
CDY39963	Canola	mitochondrion	64.67	66.96
CDX87325	Canola	mitochondrion	64.45	66.74
Os07t0461900-01	Rice	plastid	46.68	66.46
TraesCS1A01G072200.1	Wheat	plastid	62.53	63.9
TraesCS1D01G074600.1	Wheat	plastid	62.74	63.7
TraesCS1B01G090600.1	Wheat	plastid	62.1	63.04
EES17651	Sorghum	plastid	59.96	60.09
HORVU1Hr1G015560.5	Barley	plastid	63.17	57.62
Zm00001d035443_P001	Maize	plastid	58.24	54.95
CDY68670	Canola	cytosol	48.18	50.45
Bra008457.1-P	Field mustard	cytosol, peroxisome, plastid	48.39	46.22
VIT_10s0003g03870.t01	Wine grape	mitochondrion	29.34	29.4
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	28.91	28.3
VIT_06s0004g07660.t01	Wine grape	mitochondrion	28.91	28.24
VIT_07s0031g01330.t01	Wine grape	mitochondrion	28.05	27.75
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	25.05	23.73
VIT_03s0017g01760.t01	Wine grape	mitochondrion	24.41	21.63
VIT_17s0000g00900.t01	Wine grape	plastid	21.84	21.56

Protein Annotations

EntrezGene:100242776	wikigene:100242776	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.1.1.1.4	InterPro:AcOrn/SuccOrn_fam
InterPro:Aminotrans_3	ProteinID:CBI21681	ProteinID:CBI21681.3	UniProt:D7SWN2	EMBL:FN595234	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006525	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0042802	InterPro:IPR015421
InterPro:IPR015422	EntrezGene:LOC100242776	wikigene:LOC100242776	HAMAP:MF_01107	PFAM:PF00202	PIRSF:PIRSF000521
ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF79	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	TIGR:TC65204	TIGRFAMs:TIGR00707	UniParc:UPI00015CB440	ArrayExpress:VIT_19s0027g01790	EnsemblPlantsGene:VIT_19s0027g01790
EnsemblPlants:VIT_19s0027g01790.t01	unigene:Vvi.17236	RefSeq:XP_002268013	RefSeq:XP_002268013.1	RefSeq:XP_010644866.1	SEG:seg

Description

No Description!

Coordinates

chr19:-:22076131..22082806

Molecular Weight (calculated)

50018.3 Da

IEP (calculated)

6.834

GRAVY (calculated)

0.064

Length

467 amino acids

Sequence
(BLAST)

001: MSCMHVFPNS SVSQANTVHR VFKLEGGRTL VQVNGQRAVS ACLNVEVKAP KSANLGKLGF GESKDVMEME GRVIVGTYAR TPIVLVSGKG CKLYDAEGRE
101: YLDMSSGIAV NSLGHGDPTW LKAVIEQANT LTHVSNIYYS IPQVELAKRL VACSFSDRVF FSNSGTEANE AAIKFARKFQ RHSHPDAKEP PTDFIAFTNS
201: FHGRTMGALA LTSKEHYRSP FEPVMPGVTF VEYGNIEATK ELIQKGKTAA VFVEPIQGEG GIYSATKEFL QFLRSACDDA GVLLVFDEVQ CGLGRTGHLW
301: AHESYGVFPD IMTLAKPLAG GLPIGAVLVT ERVASAINFG DHGSTFAGSP LVCNAALAVL EKISEPSFLA SVAKKGQYLK QILTQKLGHN PHVKEVRGFG
401: LIVGIELDVQ ASPLVVACQE AGLLVLTSGK GNVVRLVPPL IITEEELELA AEVLSGSLPA LDGSNSK

Best Arabidopsis Sequence Match ( AT1G80600.1 )
(BLAST)

001: MASLSQITLP RAPSSEIGLL RRRLERPIIR TRIGFNGRIA SVLTNAGDQA VSVKASVSQK VIEEEAKVIV GTYARAPVVL SSGKGCKLFD PEGKEYLDCA
101: SGIAVNALGH GDPDWLRAVT EQAGVLAHVS NVYYTIPQIE LAKRLVASSF ADRVFFCNSG TEANEAAIKF SRKFQRFTHP EDKEVATGFI AFTNSFHGRT
201: LGALALTSKE QYRTPFEPIM PGVTFLEYGN IQAATDLIRS GKIAAVFVEP IQGEGGIYSA TKEFLQSLRS ACDAAGSLLV FDEVQCGLGR TGLMWAYEAF
301: GVTPDIMTVA KPLAGGLPIG AVLVTEKVAE TINYGDHGST FAGSPLVCSA AIAVMDKVSK PSFLSSVSNK GRYFRDLLVK KLGGNSHVKE VRGEGLIIGV
401: ELDVPASSLV DACRDSGLLI LTAGKGNVVR IVPPLVISEE EIERAVEIMS QNLTALD

Arabidopsis Description

WIN1Acetylornithine aminotransferase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M8M7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.