Factsheet for VIT_17s0000g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51376	Soybean	plastid	80.76	81.97
KRH60678	Soybean	nucleus	81.18	81.7
CDY62883	Canola	plastid	81.61	81.61
Bra035836.1-P	Field mustard	plastid	81.4	81.4
CDY41519	Canola	plastid	81.18	81.18
Bra038646.1-P	Field mustard	plastid	80.97	80.97
CDX81186	Canola	plastid	80.97	80.97
CDY16715	Canola	plastid	80.97	80.97
AT5G63570.1	Thale cress	plastid	80.97	80.8
PGSC0003DMT400082447	Potato	cytosol	81.61	80.25
Solyc04g009200.2.1	Tomato	plastid	81.18	79.67
AT3G48730.1	Thale cress	plastid	79.49	79.66
GSMUA_Achr6P07940_001	Banana	plastid	78.01	77.85
Zm00001d038547_P001	Maize	plastid	77.17	77.0
KXG22248	Sorghum	plastid	76.96	76.96
TraesCS7D01G261800.1	Wheat	plastid	76.74	76.91
TraesCS7A01G260800.2	Wheat	plastid	76.32	76.48
TraesCS7B01G158800.1	Wheat	plastid	75.69	75.85
Os08t0532200-01	Rice	plastid	76.11	75.31
TraesCS7D01G262000.1	Wheat	mitochondrion	50.53	71.99
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	75.9	69.98
HORVU7Hr1G054360.1	Barley	plastid	30.44	68.25
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	22.41	22.22
VIT_10s0003g03870.t01	Wine grape	mitochondrion	21.78	22.1
VIT_07s0031g01330.t01	Wine grape	mitochondrion	21.99	22.03
VIT_19s0027g01790.t01	Wine grape	plastid	21.56	21.84
VIT_09s0002g08670.t01	Wine grape	plastid	21.35	21.81
VIT_06s0004g07660.t01	Wine grape	mitochondrion	21.56	21.34
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	20.51	19.68
VIT_03s0017g01760.t01	Wine grape	mitochondrion	20.72	18.6

Protein Annotations

KEGG:00860+5.4.3.8	EntrezGene:100250737	wikigene:100250737	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase
MapMan:7.12.1.4	UniProt:A5BEM6	EMBL:AM456861	InterPro:Aminotrans_3	ProteinID:CAN83169	ProteinID:CAN83169.1
ProteinID:CCB43343	ProteinID:CCB43343.1	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0030170	GO:GO:0033014	GO:GO:0042286	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100250737
wikigene:LOC100250737	HAMAP:MF_00375	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR43713	PANTHER:PTHR43713:SF2
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGR:TC61157	TIGR:TC61478
TIGRFAMs:TIGR00713	UniParc:UPI00015244A7	ArrayExpress:VIT_17s0000g00900	EnsemblPlantsGene:VIT_17s0000g00900	EnsemblPlants:VIT_17s0000g00900.t01	unigene:Vvi.10772
RefSeq:XP_002284200	RefSeq:XP_002284200.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:-:592748..596787

Molecular Weight (calculated)

50439.6 Da

IEP (calculated)

6.074

GRAVY (calculated)

0.012

Length

473 amino acids

Sequence
(BLAST)

001: MASVSGGVAL SCPSRLSHRS SSSSHRRHVS SSSVKMAVSV DEKKKSFTLR KSEEAFEIAK ELMPGGVNSP VRAFKSVGGQ PILFDSVKGS HMWDIDGNEY
101: IDYVGSWGPA IIGHADDEVL AALAETMKKG TSFGAPCLLE NILAEMVISA VPSIEMVRFV NSGTEACMGM LRLARAFTGK EKIIKFEGCY HGHADPFLVK
201: AGSGVATLGL PDSPGVPRAA TFETLTSPFN DLSTVEKLFE ANKGEIAAVI LEPVVGNSGF IAPKPDFLNA LQEITKENGA LLVFDEVMTG FRISYGGAQE
301: YFGITPDITT LGKIIGGGLP VGAYGGRREI MELVAPAGPM YQAGTLSGNP LAMTAGIQTL KRLKEPGSYE YLDKITGELI QGILDAGKKA GHAICGGYIS
401: GMFGFFFTEG PVYNFGDAKN SDTAKFARFF RGMLEEGVYF APSQFEAGFT SLAHTPEDIQ QTIAAAEKVF RKI

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.