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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
MultiLoc:mitochondrion
Plant-mPloc:cytosol, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G63570.1 Solyc04g008430.1.1 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400082447 Potato cytosol 98.34 98.54
CDY62883 Canola plastid 81.74 83.3
CDY41519 Canola plastid 81.33 82.88
AT3G48730.1 Thale cress plastid 81.12 82.84
AT5G63570.1 Thale cress plastid 81.33 82.7
Bra038646.1-P Field mustard plastid 81.12 82.66
CDY16715 Canola plastid 80.91 82.45
Bra035836.1-P Field mustard plastid 80.91 82.45
CDX81186 Canola plastid 80.5 82.03
VIT_17s0000g00900.t01 Wine grape plastid 79.67 81.18
KXG22248 Sorghum plastid 77.39 78.86
Zm00001d038547_P001 Maize plastid 76.76 78.06
TraesCS7D01G261800.1 Wheat plastid 75.93 77.54
TraesCS7A01G260800.2 Wheat plastid 75.93 77.54
GSMUA_Achr6P07940_001 Banana plastid 75.73 77.0
TraesCS7B01G158800.1 Wheat plastid 75.31 76.91
Os08t0532200-01 Rice plastid 75.93 76.57
TraesCS7D01G262000.1 Wheat mitochondrion 50.83 73.8
HORVU7Hr1G054380.1 Barley cytosol, peroxisome, plastid 75.52 70.96
HORVU7Hr1G054360.1 Barley plastid 29.46 67.3
KRH17479 Soybean plastid 56.64 65.78
Solyc08g048450.2.1 Tomato cytosol, plastid 20.54 23.29
Solyc12g006470.1.1 Tomato extracellular, nucleus 20.95 22.05
Solyc04g054310.2.1 Tomato extracellular, plastid 21.37 21.78
Solyc08g080370.2.1 Tomato plastid 20.75 21.74
Solyc10g076250.1.1 Tomato mitochondrion 21.37 21.55
Solyc08g014610.2.1 Tomato cytosol 20.12 21.18
Solyc07g043310.2.1 Tomato nucleus 21.16 19.81
Solyc12g006450.1.1 Tomato plastid 20.95 19.57
Protein Annotations
KEGG:00860+5.4.3.8Gene3D:3.40.640.10Gene3D:3.90.1150.10InterPro:4pyrrol_synth_GluAld_NH2TrfaseMapMan:7.12.1.4InterPro:Aminotrans_3
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006779GO:GO:0006782GO:GO:0008150GO:GO:0008152GO:GO:0008483
GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0015995GO:GO:0016740
GO:GO:0016853GO:GO:0030170GO:GO:0033014GO:GO:0042286InterPro:IPR015421InterPro:IPR015422
UniProt:K4BP76HAMAP:MF_00375PFAM:PF00202ScanProsite:PS00600PANTHER:PTHR43713PANTHER:PTHR43713:SF2
InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383EnsemblPlantsGene:Solyc04g009200.2EnsemblPlants:Solyc04g009200.2.1
TIGRFAMs:TIGR00713UniParc:UPI0001ED25CESEG:seg:::
Description
No Description!
Coordinates
chr4:-:2695320..2699163
Molecular Weight (calculated)
51503.0 Da
IEP (calculated)
6.999
GRAVY (calculated)
-0.069
Length
482 amino acids
Sequence
(BLAST)
001: MAAVNGVGLS WPSKLTKNQT PKWGFSPSHR RCNPSSSSSS ATIRMTASVD EKKKTFTLEK SEEAFSKAKE LMPGGVNSPV RAFKSVGGQP IIIDSVKGSR
101: MRDIDGNEYI DYVGSWGPAI IGHADDEVLA ALAETMKKGT SFGAPCLLEN TLAEMVISAV PSIEMVRFVN SGTEACMGVL RLARAFTCRP KIIKFEGCYH
201: GHADPFLVKA GSGVATLGLP DSPGVPKAAT IDTLTAPYND ISAVESLFEE HKGEIAAVIL EPVVGNAGFI PPKLEFLAAI RKITKENDAL LIFDEVMTGF
301: RLAYGGAQEY FGITPDLTTL GKIIGGGLPV GAYGGRRDIM EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLQGQGTYEH LDKITAELTQ GILDAGKKTG
401: HAMCGGSIRG MFGFFFADGP IYNFSDAKKS DTEKFGRFYR GMLEEGVYFA PSQFEAGFTS LAHTPEDIQR TVAAAEKVLK QI
Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)
001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI
Arabidopsis Description
GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.