Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 plastid: 26371478 plastid: 28183294 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
28183294
doi
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G63570.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400082447 | Potato | cytosol | 98.34 | 98.54 |
CDY62883 | Canola | plastid | 81.74 | 83.3 |
CDY41519 | Canola | plastid | 81.33 | 82.88 |
AT3G48730.1 | Thale cress | plastid | 81.12 | 82.84 |
AT5G63570.1 | Thale cress | plastid | 81.33 | 82.7 |
Bra038646.1-P | Field mustard | plastid | 81.12 | 82.66 |
CDY16715 | Canola | plastid | 80.91 | 82.45 |
Bra035836.1-P | Field mustard | plastid | 80.91 | 82.45 |
CDX81186 | Canola | plastid | 80.5 | 82.03 |
VIT_17s0000g00900.t01 | Wine grape | plastid | 79.67 | 81.18 |
KXG22248 | Sorghum | plastid | 77.39 | 78.86 |
Zm00001d038547_P001 | Maize | plastid | 76.76 | 78.06 |
TraesCS7D01G261800.1 | Wheat | plastid | 75.93 | 77.54 |
TraesCS7A01G260800.2 | Wheat | plastid | 75.93 | 77.54 |
GSMUA_Achr6P07940_001 | Banana | plastid | 75.73 | 77.0 |
TraesCS7B01G158800.1 | Wheat | plastid | 75.31 | 76.91 |
Os08t0532200-01 | Rice | plastid | 75.93 | 76.57 |
TraesCS7D01G262000.1 | Wheat | mitochondrion | 50.83 | 73.8 |
HORVU7Hr1G054380.1 | Barley | cytosol, peroxisome, plastid | 75.52 | 70.96 |
HORVU7Hr1G054360.1 | Barley | plastid | 29.46 | 67.3 |
KRH17479 | Soybean | plastid | 56.64 | 65.78 |
Solyc08g048450.2.1 | Tomato | cytosol, plastid | 20.54 | 23.29 |
Solyc12g006470.1.1 | Tomato | extracellular, nucleus | 20.95 | 22.05 |
Solyc04g054310.2.1 | Tomato | extracellular, plastid | 21.37 | 21.78 |
Solyc08g080370.2.1 | Tomato | plastid | 20.75 | 21.74 |
Solyc10g076250.1.1 | Tomato | mitochondrion | 21.37 | 21.55 |
Solyc08g014610.2.1 | Tomato | cytosol | 20.12 | 21.18 |
Solyc07g043310.2.1 | Tomato | nucleus | 21.16 | 19.81 |
Solyc12g006450.1.1 | Tomato | plastid | 20.95 | 19.57 |
Protein Annotations
KEGG:00860+5.4.3.8 | Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | InterPro:4pyrrol_synth_GluAld_NH2Trfase | MapMan:7.12.1.4 | InterPro:Aminotrans_3 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006779 | GO:GO:0006782 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008483 |
GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0015995 | GO:GO:0016740 |
GO:GO:0016853 | GO:GO:0030170 | GO:GO:0033014 | GO:GO:0042286 | InterPro:IPR015421 | InterPro:IPR015422 |
UniProt:K4BP76 | HAMAP:MF_00375 | PFAM:PF00202 | ScanProsite:PS00600 | PANTHER:PTHR43713 | PANTHER:PTHR43713:SF2 |
InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | EnsemblPlantsGene:Solyc04g009200.2 | EnsemblPlants:Solyc04g009200.2.1 |
TIGRFAMs:TIGR00713 | UniParc:UPI0001ED25CE | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4:-:2695320..2699163
Molecular Weight (calculated)
51503.0 Da
IEP (calculated)
6.999
GRAVY (calculated)
-0.069
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVNGVGLS WPSKLTKNQT PKWGFSPSHR RCNPSSSSSS ATIRMTASVD EKKKTFTLEK SEEAFSKAKE LMPGGVNSPV RAFKSVGGQP IIIDSVKGSR
101: MRDIDGNEYI DYVGSWGPAI IGHADDEVLA ALAETMKKGT SFGAPCLLEN TLAEMVISAV PSIEMVRFVN SGTEACMGVL RLARAFTCRP KIIKFEGCYH
201: GHADPFLVKA GSGVATLGLP DSPGVPKAAT IDTLTAPYND ISAVESLFEE HKGEIAAVIL EPVVGNAGFI PPKLEFLAAI RKITKENDAL LIFDEVMTGF
301: RLAYGGAQEY FGITPDLTTL GKIIGGGLPV GAYGGRRDIM EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLQGQGTYEH LDKITAELTQ GILDAGKKTG
401: HAMCGGSIRG MFGFFFADGP IYNFSDAKKS DTEKFGRFYR GMLEEGVYFA PSQFEAGFTS LAHTPEDIQR TVAAAEKVLK QI
101: MRDIDGNEYI DYVGSWGPAI IGHADDEVLA ALAETMKKGT SFGAPCLLEN TLAEMVISAV PSIEMVRFVN SGTEACMGVL RLARAFTCRP KIIKFEGCYH
201: GHADPFLVKA GSGVATLGLP DSPGVPKAAT IDTLTAPYND ISAVESLFEE HKGEIAAVIL EPVVGNAGFI PPKLEFLAAI RKITKENDAL LIFDEVMTGF
301: RLAYGGAQEY FGITPDLTTL GKIIGGGLPV GAYGGRRDIM EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLQGQGTYEH LDKITAELTQ GILDAGKKTG
401: HAMCGGSIRG MFGFFFADGP IYNFSDAKKS DTEKFGRFYR GMLEEGVYFA PSQFEAGFTS LAHTPEDIQR TVAAAEKVLK QI
001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI
Arabidopsis Description
GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.