Factsheet for Solyc07g043310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030683	Potato	mitochondrion	98.25	98.25
Solyc12g006450.1.1	Tomato	plastid	80.58	80.43
Bra031332.1-P	Field mustard	mitochondrion	76.5	78.8
CDY10619	Canola	mitochondrion	76.5	78.8
CDY37389	Canola	mitochondrion	76.5	78.8
CDY58748	Canola	mitochondrion	75.73	78.31
KRH24110	Soybean	mitochondrion	77.48	77.78
Solyc08g014610.2.1	Tomato	cytosol	69.13	77.73
Bra023845.1-P	Field mustard	mitochondrion	75.34	77.45
VIT_03s0017g01760.t01	Wine grape	mitochondrion	79.03	77.23
Solyc12g006470.1.1	Tomato	extracellular, nucleus	68.54	77.07
CDY39506	Canola	mitochondrion	75.53	76.88
CDY10622	Canola	golgi	69.71	76.06
GSMUA_Achr5P00340_001	Banana	mitochondrion	74.37	75.84
TraesCS2B01G440400.1	Wheat	golgi	75.15	75.73
TraesCS2A01G421400.1	Wheat	mitochondrion	74.95	75.54
HORVU2Hr1G098880.1	Barley	mitochondrion	74.76	75.34
Os04t0614600-01	Rice	mitochondrion	74.95	74.81
EES11419	Sorghum	mitochondrion	74.17	74.76
AT3G22200.2	Thale cress	mitochondrion	74.37	74.66
KRH29085	Soybean	cytosol	76.7	74.53
TraesCS2D01G418400.2	Wheat	mitochondrion	73.79	74.36
Zm00001d026293_P001	Maize	mitochondrion	74.17	74.32
EES14702	Sorghum	mitochondrion	73.2	74.07
Os08t0205900-01	Rice	mitochondrion	73.01	73.73
TraesCS7B01G246800.1	Wheat	mitochondrion	72.23	73.23
TraesCS7D01G341900.2	Wheat	mitochondrion	72.23	73.23
Zm00001d002326_P003	Maize	mitochondrion	73.59	73.17
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	73.01	73.15
Os04t0614500-01	Rice	plastid	69.9	72.43
Bra031335.1-P	Field mustard	mitochondrion	70.29	72.11
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	21.36	71.43
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	14.76	71.03
TraesCS7A01G334200.1	Wheat	mitochondrion	71.07	70.93
Zm00001d015445_P008	Maize	cytosol	19.42	69.93
Os02t0112900-00	Rice	cytosol	64.66	68.94
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	63.3	67.36
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	72.43	66.49
TraesCS7A01G373400.1	Wheat	plastid	59.03	64.68
Zm00001d015444_P003	Maize	mitochondrion	26.02	63.21
Bra031334.1-P	Field mustard	cytosol	23.3	56.87
CDY10621	Canola	extracellular, plastid	24.85	54.24
Solyc08g048450.2.1	Tomato	cytosol, plastid	21.16	25.65
Solyc08g080370.2.1	Tomato	plastid	22.52	25.22
Solyc04g054310.2.1	Tomato	extracellular, plastid	21.55	23.47
Solyc10g076250.1.1	Tomato	mitochondrion	21.75	23.43
Solyc04g009200.2.1	Tomato	plastid	19.81	21.16

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	InterPro:Aminotrans_3	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	GO:GO:0034387	GO:GO:0102351
InterPro:IPR015421	InterPro:IPR015422	UniProt:K4CEJ0	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR42684
PANTHER:PTHR42684:SF5	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc07g043310.2
EnsemblPlants:Solyc07g043310.2.1	UniParc:UPI000276C3EC	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:56990138..56996800

Molecular Weight (calculated)

56712.1 Da

IEP (calculated)

7.895

GRAVY (calculated)

-0.179

Length

515 amino acids

Sequence
(BLAST)

001: MAKISRLFGS TVKAAITAQA GFHGKRIPAV SSLQEHIVKS TPARYNSTQA CLENDISGTD NKGFKGHDML APFTAGWQST DVDPLIIEKS EGSHVYDMQG
101: RKYIDTLAGL WCTALGGNEP RLVDAATKQL NTLPFYHSFW NRTTKPSLDL AKELLDMFTA KKMAKAFFTN SGSEANDTQV KLVWYYNNAL GRPNKKKFIA
201: RAKAYHGSTL ISASLTGLPA LHQNFDLPAP FVLHTDCPHY WRYHLPGETE EEFSTRLAKN LEDLILKEGP ETIAAFIAEP VMGAGGVIPP PATYFDKIQA
301: VVKKYDILFI ADEVICAFGR LGTMFGSDMY NIKPDLVTLA KALSSAYMPI GAVLVSPEVS DVIHSQSNKL GSFSHGFTYS GHPVACAVAL EAIKIYKERN
401: MVERVNRISP KFQEGLKAFS DSPIIGEIRG LGLILATEFA NNKSPNDPFP PEWGVGAYFG AQCQKNGMLV RVAGDTIMMS PPFVVTPEEL DELIRIYGKA
501: LRETEKRVEE LKSQK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.