CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29085	Soybean	cytosol	95.32	92.26
Bra031332.1-P	Field mustard	mitochondrion	77.39	79.4
CDY10619	Canola	mitochondrion	77.39	79.4
CDY37389	Canola	mitochondrion	77.39	79.4
CDY58748	Canola	mitochondrion	77.0	79.32
Bra023845.1-P	Field mustard	mitochondrion	77.19	79.04
CDY39506	Canola	mitochondrion	77.58	78.66
VIT_03s0017g01760.t01	Wine grape	mitochondrion	80.7	78.56
GSMUA_Achr5P00340_001	Banana	mitochondrion	77.19	78.42
PGSC0003DMT400030683	Potato	mitochondrion	77.97	77.67
Solyc07g043310.2.1	Tomato	nucleus	77.78	77.48
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	46.2	77.45
PGSC0003DMT400062372	Potato	plastid	77.78	77.33
Solyc12g006450.1.1	Tomato	plastid	77.39	76.94
Os04t0614600-01	Rice	mitochondrion	77.0	76.55
Solyc12g006470.1.1	Tomato	extracellular, nucleus	68.23	76.42
PGSC0003DMT400064961	Potato	cytosol	68.23	76.42
TraesCS7D01G341900.2	Wheat	mitochondrion	75.63	76.38
EES14702	Sorghum	mitochondrion	75.63	76.23
TraesCS7B01G246800.1	Wheat	mitochondrion	75.24	75.98
Solyc08g014610.2.1	Tomato	cytosol	67.84	75.98
CDY10622	Canola	golgi	69.59	75.64
AT3G22200.2	Thale cress	mitochondrion	75.63	75.63
Os08t0205900-01	Rice	mitochondrion	75.05	75.49
EES11419	Sorghum	mitochondrion	75.05	75.34
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	75.05	74.9
Zm00001d026293_P001	Maize	mitochondrion	75.05	74.9
HORVU2Hr1G098880.1	Barley	mitochondrion	74.27	74.56
TraesCS2B01G440400.1	Wheat	golgi	74.07	74.36
TraesCS2D01G418400.2	Wheat	mitochondrion	74.07	74.36
TraesCS7A01G334200.1	Wheat	mitochondrion	74.66	74.22
TraesCS2A01G421400.1	Wheat	mitochondrion	73.88	74.17
Zm00001d002326_P003	Maize	mitochondrion	74.27	73.55
Bra031335.1-P	Field mustard	mitochondrion	71.54	73.11
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	15.2	72.9
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	21.83	72.73
Os04t0614500-01	Rice	plastid	69.79	72.03
Zm00001d015445_P008	Maize	cytosol	20.08	72.03
Os02t0112900-00	Rice	cytosol	67.45	71.64
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	65.69	69.63
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	75.24	68.81
TraesCS7A01G373400.1	Wheat	plastid	60.43	65.96
Zm00001d015444_P003	Maize	mitochondrion	26.51	64.15
Bra031334.1-P	Field mustard	cytosol	24.37	59.24
CDY10621	Canola	extracellular, plastid	25.93	56.36
KRH42566	Soybean	mitochondrion	24.37	26.77
KRH58670	Soybean	mitochondrion	23.78	26.01
KRH48868	Soybean	nucleus	23.2	25.48
KRH35638	Soybean	cytosol	22.81	25.27
KRH31231	Soybean	mitochondrion	22.61	24.52
KRH59427	Soybean	mitochondrion	22.61	24.32
KRH43286	Soybean	mitochondrion	22.42	24.21
KRH45041	Soybean	extracellular, mitochondrion	7.02	24.16
KRH65497	Soybean	mitochondrion	22.22	24.0
KRH76075	Soybean	mitochondrion	22.03	23.79
KRH04754	Soybean	cytosol	5.85	22.06
KRH00394	Soybean	mitochondrion	20.47	21.78
KRH51376	Soybean	plastid	19.69	21.67
KRH60678	Soybean	nucleus	19.49	21.28
KRG97644	Soybean	mitochondrion	15.59	20.57
KRH17479	Soybean	plastid	16.57	20.48

Protein Annotations

EntrezGene:100792355	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	EMBL:ACUP02007171	InterPro:Aminotrans_3
ncoils:Coil	EnsemblPlantsGene:GLYMA_12G022300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008483
GO:GO:0016740	GO:GO:0030170	UniProt:I1LPE4	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH24110
ProteinID:KRH24110	ProteinID:KRH24110.1	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR42684	PANTHER:PTHR42684:SF5
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI00023CC5C1	:

Description

hypothetical protein

Coordinates

chr12:+:1620060..1629800

Molecular Weight (calculated)

56234.5 Da

IEP (calculated)

8.407

GRAVY (calculated)

-0.157

Length

513 amino acids

Sequence
(BLAST)

001: MHTLLRSTLR TKTASSLAYA AVSRSAQENL LQAPLLSRSN STEASLAKDT SSNDVKNGQG FKGHSMLAPF TAGWQTTDLH PLVIEKSEGS YVYDINGKKY
101: LDALAGLWAT SLGGSEPRLV DAAIAQLKKL PFYHSFWNRT TLPSLDLAKE LLEMFTARKM GKAFFVNSGS EANDTQVKLV WYYNNALGRP DKKKFIARAK
201: SYHGSTLIAA SLSGLPALHQ KFDLPAPFVL HTDCPHYWRY HLPGETEEEF STRLAKNLEQ LILKEGPETI AAFIAEPVMG AGGVIVPPST YFEKVQAVVK
301: KYDILFIADE VICAFGRLGT MFGCDKYNIK PDLVSLAKAL SSAYLPIGAV LVSPEISDVI HAQSNKLGSF SHGFTYSGHP AACAVAIEAL KIYKERNIVD
401: QVNKIAPRFQ DGIKAFSDSP IIGEIRGTGL ILGTEFTDNK SPNDPFPPEW GVGAYFGAQC EKHGMLVRVA GDNIMMSPPY IISQGEVDEL ISIYGKALKE
501: TEKKVQELKS QRK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.