Factsheet for Solyc12g006450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
nucleus 1
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
endoplasmic reticulum: 29145071

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062372	Potato	plastid	96.71	96.71
Solyc07g043310.2.1	Tomato	nucleus	80.43	80.58
CDY58748	Canola	mitochondrion	75.78	78.51
Bra031332.1-P	Field mustard	mitochondrion	75.97	78.4
CDY10619	Canola	mitochondrion	75.97	78.4
CDY37389	Canola	mitochondrion	75.97	78.4
Solyc12g006470.1.1	Tomato	extracellular, nucleus	69.57	78.38
Bra023845.1-P	Field mustard	mitochondrion	75.19	77.45
KRH24110	Soybean	mitochondrion	76.94	77.39
Solyc08g014610.2.1	Tomato	cytosol	68.41	77.07
CDY39506	Canola	mitochondrion	75.19	76.68
VIT_03s0017g01760.t01	Wine grape	mitochondrion	78.29	76.66
CDY10622	Canola	golgi	69.38	75.85
EES14702	Sorghum	mitochondrion	74.61	75.64
GSMUA_Achr5P00340_001	Banana	mitochondrion	73.64	75.25
KRH29085	Soybean	cytosol	76.94	74.91
Os08t0205900-01	Rice	mitochondrion	73.45	74.31
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	73.64	73.93
AT3G22200.2	Thale cress	mitochondrion	73.45	73.88
TraesCS7D01G341900.2	Wheat	mitochondrion	72.09	73.23
Os04t0614600-01	Rice	mitochondrion	72.87	72.87
TraesCS7B01G246800.1	Wheat	mitochondrion	71.71	72.83
Bra031335.1-P	Field mustard	mitochondrion	70.54	72.51
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	14.92	71.96
HORVU2Hr1G098880.1	Barley	mitochondrion	70.93	71.62
EES11419	Sorghum	mitochondrion	70.74	71.43
Os04t0614500-01	Rice	plastid	68.41	71.03
TraesCS7A01G334200.1	Wheat	mitochondrion	70.54	70.54
TraesCS2A01G421400.1	Wheat	mitochondrion	69.77	70.45
TraesCS2B01G440400.1	Wheat	golgi	69.77	70.45
TraesCS2D01G418400.2	Wheat	mitochondrion	69.77	70.45
Zm00001d026293_P001	Maize	mitochondrion	70.16	70.43
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	20.93	70.13
Os02t0112900-00	Rice	cytosol	65.5	69.98
Zm00001d015445_P008	Maize	cytosol	19.38	69.93
Zm00001d002326_P003	Maize	mitochondrion	69.96	69.69
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	64.53	68.8
TraesCS7A01G373400.1	Wheat	plastid	61.05	67.02
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	71.51	65.78
Zm00001d015444_P003	Maize	mitochondrion	25.0	60.85
Bra031334.1-P	Field mustard	cytosol	22.87	55.92
CDY10621	Canola	extracellular, plastid	24.22	52.97
Solyc08g048450.2.1	Tomato	cytosol, plastid	22.09	26.82
Solyc04g054310.2.1	Tomato	extracellular, plastid	23.64	25.79
Solyc08g080370.2.1	Tomato	plastid	22.09	24.78
Solyc10g076250.1.1	Tomato	mitochondrion	22.09	23.85
Solyc04g009200.2.1	Tomato	plastid	19.57	20.95

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	InterPro:Aminotrans_3	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008483	GO:GO:0009507	GO:GO:0009536	GO:GO:0016740	GO:GO:0030170	GO:GO:0034387
GO:GO:0102351	InterPro:IPR015421	InterPro:IPR015422	UniProt:K4DBI2	PFAM:PF00202	ScanProsite:PS00600
PANTHER:PTHR42684	PANTHER:PTHR42684:SF5	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc12g006450.1	EnsemblPlants:Solyc12g006450.1.1	UniParc:UPI000276A7C4	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:921921..927162

Molecular Weight (calculated)

56853.0 Da

IEP (calculated)

7.030

GRAVY (calculated)

-0.199

Length

516 amino acids

Sequence
(BLAST)

001: MAKITSLIGS GIVAATNQVG PHVKHIPAVG NLQKQIVSDQ IQVRWSSTET SLKNDISATD VRGYKGHDML APFTAGWHST DLEPLVIQKS EGSYVYDVNG
101: KKYLDALAGL WCTSLGGNEP RLVAAATKQL NELPFYHSFW NRSTKPSLDL AKELLDLFTA NKMAKAFFTN SGSEANDTQV KLVWYYNNAL GRPDKKKFIA
201: RTKSYHGSTL ISASLSGLPA LHQQFDLPAP FVLHTDCPHF WRFHQPGETE EEFSTRLANN LENLILKEGP ETIAAFIAEP VMGAGGVIPP PATYFEKVQA
301: ILKKYDILFI ADEVICGFGR LGTMFGCEKY NIKPDLVSVA KALSSGYMPI GAVLVSPEVS DVIYSQSNKL GTFSHGFTYS GHPVSCAVAL ETLKIYKERN
401: IIEQVNRISP KFQEGLKAFS DSPIIGEIRG TGLLHGTEFT DNKSPNDPFP PEWGIGAYFG ARCEKHGVLV RVAGDNIMMS PPYILSLEEI DELIIKYGKA
501: LKDTENRVEE LKSQKK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.