Factsheet for TraesCS2B01G440400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G421400.1	Wheat	mitochondrion	99.22	99.22
TraesCS2D01G418400.2	Wheat	mitochondrion	97.26	97.26
HORVU2Hr1G098880.1	Barley	mitochondrion	96.67	96.67
Os04t0614600-01	Rice	mitochondrion	89.24	88.37
EES11419	Sorghum	mitochondrion	87.67	87.67
Zm00001d026293_P001	Maize	mitochondrion	86.3	85.8
Zm00001d002326_P003	Maize	mitochondrion	85.91	84.75
TraesCS7B01G246800.1	Wheat	mitochondrion	81.02	81.5
GSMUA_Achr5P00340_001	Banana	mitochondrion	78.08	79.01
CDY58748	Canola	mitochondrion	75.15	77.11
Bra023845.1-P	Field mustard	mitochondrion	75.15	76.65
CDY39506	Canola	mitochondrion	75.34	76.09
CDY37389	Canola	mitochondrion	74.17	75.8
Bra031332.1-P	Field mustard	mitochondrion	73.97	75.6
CDY10619	Canola	mitochondrion	73.97	75.6
PGSC0003DMT400030683	Potato	mitochondrion	75.73	75.15
Solyc07g043310.2.1	Tomato	nucleus	75.73	75.15
KRH24110	Soybean	mitochondrion	74.36	74.07
CDY10622	Canola	golgi	67.32	72.88
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	68.69	72.52
AT3G22200.2	Thale cress	mitochondrion	72.8	72.51
PGSC0003DMT400064961	Potato	cytosol	64.97	72.49
VIT_03s0017g01760.t01	Wine grape	mitochondrion	74.76	72.49
Solyc08g014610.2.1	Tomato	cytosol	63.99	71.4
Solyc12g006470.1.1	Tomato	extracellular, nucleus	63.8	71.18
KRH29085	Soybean	cytosol	73.19	70.57
Bra031335.1-P	Field mustard	mitochondrion	68.69	69.92
Solyc12g006450.1.1	Tomato	plastid	70.45	69.77
PGSC0003DMT400062372	Potato	plastid	70.06	69.38
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	41.29	68.95
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	66.34	68.76
Bra031334.1-P	Field mustard	cytosol	23.09	55.92
CDY10621	Canola	extracellular, plastid	25.05	54.24
TraesCS4B01G288100.1	Wheat	mitochondrion	24.66	26.3
TraesCS1B01G090600.1	Wheat	plastid	22.7	25.22
TraesCS4B01G167100.1	Wheat	mitochondrion	22.31	24.84
TraesCS1B01G308900.1	Wheat	mitochondrion	22.7	24.32
TraesCS5B01G376900.1	Wheat	mitochondrion	21.72	23.72
TraesCS7B01G158800.1	Wheat	plastid	19.37	20.97

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	InterPro:Aminotrans_3	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR42684	PANTHER:PTHR42684:SF2
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:TraesCS2B01G440400	EnsemblPlants:TraesCS2B01G440400.1
TIGR:cd00610	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:632404873..632409874

Molecular Weight (calculated)

55549.3 Da

IEP (calculated)

7.447

GRAVY (calculated)

-0.160

Length

511 amino acids

Sequence
(BLAST)

001: MIARGLLRSN ASSQASKLVK YLTSAGSLQG HADSLSDASV RHFSSASSPQ TNSTEENGFK GHGMLAPFTA GWQSNDVHPL VIERSEGSYV YDINGNKYLD
101: SLAGLWCTAL GGSEPRLVKA ATDQLNKLPF YHSFWNRTTK PTLDLADDLL SMFTASKMGK AFFTNSGSEA NDSHVKLVWY YNNALGRPNK KKFIARSKAY
201: HGSTLISASL TGLPALHQKF DLPAPFVLHT DCPHYWRFHL PGETEEEFAT RLAKNLEDLI LKEGPETIAA FIAEPVMGAG GVIPPPKTYF DKVQAVVKKY
301: DILFIVDEVI TAFGRLGTMF GSDMYNIKPD LVTLAKALSS AYVPIGATLV SPEIAAVVDS QSNKLGSFAH GFTYSGHPVA CAVAIEALKI YRERNIPDHV
401: KQIAPRFQEG TKAFAGSPIV GEIRGVGLIL GTEFANNKSR DDPFPAEWGV GAIFGQECQK RGMLVRVAGD SIMMSPPLTM TPGEVDELVS IYGEAMKATE
501: ERVAELKSKK N

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.