Factsheet for Os04t0614600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 23122787

mitochondrion: 19010998
mitochondrion: 23027867
mitochondrion: 23356873
plasma membrane: 28056797

gfp PMID: 23122787 doi

Y Shimajiri, K Ozaki, K Kainou, K Akama

Department of Biological Science, Shimane University, 1060 Nishikawatsu-chou, Matsue 690-8504, Japan.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 23356873 doi

S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar

ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G440400.1	Wheat	golgi	88.37	89.24
TraesCS2A01G421400.1	Wheat	mitochondrion	87.79	88.65
HORVU2Hr1G098880.1	Barley	mitochondrion	87.79	88.65
TraesCS2D01G418400.2	Wheat	mitochondrion	86.82	87.67
EES11419	Sorghum	mitochondrion	86.05	86.89
Zm00001d026293_P001	Maize	mitochondrion	85.66	85.99
Zm00001d002326_P003	Maize	mitochondrion	84.88	84.56
Os08t0205900-01	Rice	mitochondrion	83.33	84.31
GSMUA_Achr5P00340_001	Banana	mitochondrion	80.62	82.38
Os04t0614500-01	Rice	plastid	77.91	80.89
CDY58748	Canola	mitochondrion	75.39	78.11
Os02t0112900-00	Rice	cytosol	73.06	78.05
Bra023845.1-P	Field mustard	mitochondrion	75.39	77.64
CDY37389	Canola	mitochondrion	75.19	77.6
Bra031332.1-P	Field mustard	mitochondrion	75.0	77.4
CDY10619	Canola	mitochondrion	75.0	77.4
CDY39506	Canola	mitochondrion	75.58	77.08
KRH24110	Soybean	mitochondrion	76.55	77.0
PGSC0003DMT400030683	Potato	mitochondrion	75.19	75.34
Solyc07g043310.2.1	Tomato	nucleus	74.81	74.95
VIT_03s0017g01760.t01	Wine grape	mitochondrion	76.16	74.57
PGSC0003DMT400064961	Potato	cytosol	65.7	74.02
KRH29085	Soybean	cytosol	75.97	73.96
CDY10622	Canola	golgi	67.64	73.94
AT3G22200.2	Thale cress	mitochondrion	73.45	73.88
Solyc08g014610.2.1	Tomato	cytosol	65.31	73.58
Solyc12g006470.1.1	Tomato	extracellular, nucleus	64.73	72.93
Solyc12g006450.1.1	Tomato	plastid	72.87	72.87
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	69.19	72.41
PGSC0003DMT400062372	Potato	plastid	72.09	72.09
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	42.25	71.24
Bra031335.1-P	Field mustard	mitochondrion	68.6	70.52
Bra031334.1-P	Field mustard	cytosol	22.67	55.45
CDY10621	Canola	extracellular, plastid	24.61	53.81
Os05t0475400-02	Rice	peroxisome	19.96	26.34
Os03t0171900-01	Rice	mitochondrion	23.84	25.31
Os07t0461900-01	Rice	plastid	15.89	25.0
Os05t0129100-00	Rice	plastid	15.7	24.85
Os03t0643300-02	Rice	mitochondrion	22.09	24.1
Os03t0338000-01	Rice	peroxisome	22.09	23.55
Os08t0532200-01	Rice	plastid	19.57	21.13

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	EntrezGene:4336983	EMBL:AF297651	EMBL:AK102306
InterPro:Aminotrans_3	ProteinID:BAF15777.1	ProteinID:BAS90992.1	ProteinID:BAS90993.1	ProteinID:CAE04333.2	ncoils:Coil
ProteinID:EEE61676.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170
GO:GO:0034387	GO:GO:0102351	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlantsGene:Os04g0614600	EnsemblPlants:Os04t0614600-01
PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR42684	PANTHER:PTHR42684:SF2	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q7XN11	SUPFAM:SSF53383	UniParc:UPI00001BE54A	RefSeq:XP_015636709.1	SEG:seg

Description

aminotransferase, pyruvate-dependent GABA transaminaseSimilar to Viroid RNA-binding protein (Fragment). (Os04t0614600-01);Similar to OSIGBa0126B18.7 protein. (Os04t0614600-02)

Coordinates

chr4:+:31176650..31182404

Molecular Weight (calculated)

56477.5 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.160

Length

516 amino acids

Sequence
(BLAST)

001: MVIARGLLRS NASSSSSQAI NLLKYVTSTG SLQGHTQNLC DASTRHFSSV PSPQYNSTEE NGFKGHGMLA PFTAGWQSTD VHPLVIERSE GSYVYDIDGK
101: KYLDSLAGLW CTALGGSEPR LVKAATEQLH KLPFYHSFWN RTTKPSLDLA KELLSMFTAR EMGKVFFTNS GSEANDSQVK LVWYYNNALG RPDKKKFIAR
201: SKSYHGSTLI SASLSGLPAL HQKFDLPAPF VLHTDCPHYW RFHLPGETEE EFATRLANNL EELILKEGPE TIAAFIAEPV MGAGGVIPPP KTYFEKVQAI
301: VKKYDILFIA DEVITAFGRL GTMFGSDMYN IKPDLVSMAK ALSSAYVPIG AIMVSPEISD VIHSQSNKLG SFAHGFTYSG HPVACAVAIE ALKIYQERNI
401: PDHVKQISPR FQEGVKAFAG SPIVGEIRGV GLILGTEFAD NKSPNDPFPA EWGVGAIFGA ECQKRGMLVR VAGDNIMMSP PLIMTPDEVE ELVSIYGDAL
501: KATEERVAEL KSKKNN

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.