Factsheet for Os08t0205900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 23122787

mitochondrion: 19010998
mitochondrion: 23027867

gfp PMID: 23122787 doi

Y Shimajiri, K Ozaki, K Kainou, K Akama

Department of Biological Science, Shimane University, 1060 Nishikawatsu-chou, Matsue 690-8504, Japan.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14702	Sorghum	mitochondrion	89.02	89.19
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	26.86	88.96
Zm00001d015445_P008	Maize	cytosol	24.9	88.81
TraesCS7D01G341900.2	Wheat	mitochondrion	88.04	88.39
TraesCS7B01G246800.1	Wheat	mitochondrion	87.65	87.99
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	87.45	86.77
TraesCS7A01G334200.1	Wheat	mitochondrion	86.27	85.27
Os04t0614600-01	Rice	mitochondrion	84.31	83.33
GSMUA_Achr5P00340_001	Banana	mitochondrion	81.37	82.18
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	88.63	80.57
Os04t0614500-01	Rice	plastid	74.31	76.26
CDY58748	Canola	mitochondrion	74.31	76.1
Bra023845.1-P	Field mustard	mitochondrion	74.31	75.65
CDY37389	Canola	mitochondrion	74.12	75.6
Zm00001d015444_P003	Maize	mitochondrion	31.37	75.47
Bra031332.1-P	Field mustard	mitochondrion	73.92	75.4
CDY10619	Canola	mitochondrion	73.92	75.4
KRH24110	Soybean	mitochondrion	75.49	75.05
CDY39506	Canola	mitochondrion	74.31	74.9
Os02t0112900-00	Rice	cytosol	70.0	73.91
Solyc12g006450.1.1	Tomato	plastid	74.31	73.45
VIT_03s0017g01760.t01	Wine grape	mitochondrion	75.49	73.06
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	70.59	73.02
Solyc07g043310.2.1	Tomato	nucleus	73.73	73.01
PGSC0003DMT400064961	Potato	cytosol	65.49	72.93
PGSC0003DMT400062372	Potato	plastid	73.73	72.87
Solyc08g014610.2.1	Tomato	cytosol	65.29	72.71
PGSC0003DMT400030683	Potato	mitochondrion	73.33	72.62
CDY10622	Canola	golgi	67.06	72.46
Solyc12g006470.1.1	Tomato	extracellular, nucleus	64.71	72.05
AT3G22200.2	Thale cress	mitochondrion	72.16	71.73
KRH29085	Soybean	cytosol	74.51	71.7
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	42.55	70.92
Bra031335.1-P	Field mustard	mitochondrion	68.43	69.52
Bra031334.1-P	Field mustard	cytosol	22.55	54.5
CDY10621	Canola	extracellular, plastid	24.51	52.97
Os03t0643300-02	Rice	mitochondrion	22.94	24.74
Os05t0475400-02	Rice	peroxisome	18.63	24.3
Os03t0171900-01	Rice	mitochondrion	22.94	24.07
Os05t0129100-00	Rice	plastid	15.29	23.93
Os07t0461900-01	Rice	plastid	15.29	23.78
Os03t0338000-01	Rice	peroxisome	20.59	21.69
Os08t0532200-01	Rice	plastid	18.82	20.08

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	EntrezGene:4344928	InterPro:Aminotrans_3	ProteinID:BAD05337.1
ProteinID:BAD11549.1	ProteinID:BAF23151.1	ProteinID:BAT04302.1	ncoils:Coil	ProteinID:EEE68226.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	GO:GO:0034387	GO:GO:0102351
InterPro:IPR015421	InterPro:IPR015422	EnsemblPlantsGene:Os08g0205900	EnsemblPlants:Os08t0205900-01	PFAM:PF00202	ScanProsite:PS00600
PANTHER:PTHR42684	PANTHER:PTHR42684:SF2	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q6ZCF0
SUPFAM:SSF53383	UniParc:UPI000022F1E9	RefSeq:XP_015648304.1	SEG:seg	:	:

Description

Similar to Viroid RNA-binding protein (Fragment). (Os08t0205900-01)

Coordinates

chr8:-:6170105..6175794

Molecular Weight (calculated)

56011.4 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.099

Length

510 amino acids

Sequence
(BLAST)

001: MICRSLLLLR SNAASKASNI VKHVAATGCL PKYSSEAPAR YFSSEPSLQV DSTEENGFKG HGMLAPFTAG WQSTDLHPLV IDRSEGSYVY DINGKKYIDA
101: LAGLWSTALG GNEPRLIKAA TDQLNKLPFY HSFWNRTTKP SLDLANEILS MFTAREMGKI FFTNSGSEAN DSQVKLVWYY NNALGRPNKK KFIARSKSYH
201: GSTLVSASLS GLPALHQKFD LPAPFVLHTD CPHYWRFHLP DETEEEFATR LATNLENLIL KEGPETIAAF IAEPVMGAGG VIPPPKTYFE KIQAVLKKYD
301: ILLIADEVIT AFGRLGTMFG CDMYDIKPDL VSIAKALSSA YMPIGAILVS PEITDVIYSQ SNKLGSFAHG FTYSGHPVSC AVAIEALKIY KERNIIEHVQ
401: KIAPRFQEGI KAFSGSPIVG EIRGLGLILG TEFVDNKSPN DPFPAEWGVG SLFGAECEKR GMLIRVAGDN IMLSPPLIMT PDEVEEIICK YGDALKATEE
501: RIAELKAKRG

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.