Factsheet for PGSC0003DMT400030683

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g043310.2.1	Tomato	nucleus	98.25	98.25
PGSC0003DMT400062372	Potato	plastid	80.97	80.81
Bra031332.1-P	Field mustard	mitochondrion	76.7	79.0
CDY10619	Canola	mitochondrion	76.7	79.0
CDY37389	Canola	mitochondrion	76.7	79.0
PGSC0003DMT400064961	Potato	cytosol	69.9	78.6
CDY58748	Canola	mitochondrion	75.73	78.31
KRH24110	Soybean	mitochondrion	77.67	77.97
Bra023845.1-P	Field mustard	mitochondrion	75.53	77.64
VIT_03s0017g01760.t01	Wine grape	mitochondrion	79.03	77.23
CDY39506	Canola	mitochondrion	75.73	77.08
GSMUA_Achr5P00340_001	Banana	mitochondrion	74.95	76.44
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	45.24	76.14
CDY10622	Canola	golgi	69.71	76.06
TraesCS2B01G440400.1	Wheat	golgi	75.15	75.73
TraesCS2A01G421400.1	Wheat	mitochondrion	74.95	75.54
HORVU2Hr1G098880.1	Barley	mitochondrion	74.76	75.34
Os04t0614600-01	Rice	mitochondrion	75.34	75.19
EES11419	Sorghum	mitochondrion	74.37	74.95
KRH29085	Soybean	cytosol	76.89	74.72
AT3G22200.2	Thale cress	mitochondrion	74.37	74.66
Zm00001d026293_P001	Maize	mitochondrion	74.37	74.51
TraesCS2D01G418400.2	Wheat	mitochondrion	73.79	74.36
EES14702	Sorghum	mitochondrion	73.2	74.07
Os08t0205900-01	Rice	mitochondrion	72.62	73.33
TraesCS7B01G246800.1	Wheat	mitochondrion	72.23	73.23
TraesCS7D01G341900.2	Wheat	mitochondrion	72.23	73.23
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	73.01	73.15
Zm00001d002326_P003	Maize	mitochondrion	73.4	72.97
Os04t0614500-01	Rice	plastid	70.29	72.84
Bra031335.1-P	Field mustard	mitochondrion	70.29	72.11
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	21.55	72.08
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	14.95	71.96
TraesCS7A01G334200.1	Wheat	mitochondrion	70.87	70.74
Zm00001d015445_P008	Maize	cytosol	19.61	70.63
Os02t0112900-00	Rice	cytosol	65.05	69.36
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	63.69	67.77
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	72.23	66.31
TraesCS7A01G373400.1	Wheat	plastid	59.42	65.11
Zm00001d015444_P003	Maize	mitochondrion	26.21	63.68
Bra031334.1-P	Field mustard	cytosol	23.11	56.4
CDY10621	Canola	extracellular, plastid	24.66	53.81
PGSC0003DMT400058543	Potato	cytosol, plastid	22.91	25.82
PGSC0003DMT400076803	Potato	cytosol, extracellular, mitochondrion	12.04	24.9
PGSC0003DMT400033328	Potato	extracellular	22.14	24.1
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	21.94	23.64
PGSC0003DMT400082447	Potato	cytosol	19.61	21.0

Protein Annotations

EntrezGene:102599962	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	InterPro:Aminotrans_3	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1AUM6	PFAM:PF00202	EnsemblPlantsGene:PGSC0003DMG400011754	PGSC:PGSC0003DMG400011754
EnsemblPlants:PGSC0003DMT400030683	ScanProsite:PS00600	PANTHER:PTHR42684	PANTHER:PTHR42684:SF5	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI000296449B	RefSeq:XP_006357874.1	SEG:seg	:

Description

Gamma aminobutyrate transaminase isoform1 [Source:PGSC_GENE;Acc:PGSC0003DMG400011754]

Coordinates

chr7:+:41562513..41570326

Molecular Weight (calculated)

56584.9 Da

IEP (calculated)

7.170

GRAVY (calculated)

-0.162

Length

515 amino acids

Sequence
(BLAST)

001: MAKISRLIGS TVKAAITAQA GFHAKRIPAV SSLQEHIVKS TPARYSSTQA CLENDISGTD NKGFKGHDML APFTAGWQST DVDPLIIEKS EGSHVYDMQG
101: RKYLDTLAGL WCTALGGNEP RLVDAATKQL NTLPFYHSFW NRTTKPSLDL AKELLDMFTA KKMAKAFFTN SGSEANDTQV KLVWYYNNAL GRPNKKKFIA
201: RAKAYHGSTL ISASLTGLPA LHQNFDLPAP FVLHTDCPHY WRYHLPGETE EEFSTRLAKN LEDLILKEGP ETIAAFIAEP VMGAGGVIPP PATYFDKIQA
301: VVKKYDILFI ADEVICAFGR LGTMFGSDMY NIKPDLVSLA KALSSAYMPI GAVLVSPEVS DVIHSQSNKL GSFSHGFTYS GHPVACAVAL EAIKIYKERN
401: MVERVNTISP KFQEGLKEFS DSPIIGEIRG IGLILATEFA NNKSPNDPFP PEWGVGAYFG AQCQKNGMLV RVAGDTIMMS PPFVVTPEEL DELISIYGKA
501: LRETEKRVEE LKSQK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.