Factsheet for PGSC0003DMT400082447

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009200.2.1	Tomato	plastid	98.54	98.34
CDY62883	Canola	plastid	82.12	83.51
AT3G48730.1	Thale cress	plastid	81.7	83.26
CDY41519	Canola	plastid	81.7	83.09
AT5G63570.1	Thale cress	plastid	81.7	82.91
Bra038646.1-P	Field mustard	plastid	81.5	82.88
CDY16715	Canola	plastid	81.5	82.88
Bra035836.1-P	Field mustard	plastid	81.08	82.45
CDX81186	Canola	plastid	81.08	82.45
VIT_17s0000g00900.t01	Wine grape	plastid	80.25	81.61
KXG22248	Sorghum	plastid	77.75	79.07
Zm00001d038547_P001	Maize	plastid	76.72	77.85
TraesCS7D01G261800.1	Wheat	plastid	76.09	77.54
TraesCS7A01G260800.2	Wheat	plastid	76.09	77.54
TraesCS7B01G158800.1	Wheat	plastid	75.47	76.91
GSMUA_Achr6P07940_001	Banana	plastid	75.68	76.79
Os08t0532200-01	Rice	plastid	76.09	76.57
TraesCS7D01G262000.1	Wheat	mitochondrion	51.14	74.1
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	75.68	70.96
HORVU7Hr1G054360.1	Barley	plastid	29.31	66.82
KRH17479	Soybean	plastid	57.17	66.27
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	14.35	22.55
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	22.04	22.18
PGSC0003DMT400064961	Potato	cytosol	20.79	21.83
PGSC0003DMT400033328	Potato	extracellular	21.41	21.78
PGSC0003DMT400076803	Potato	cytosol, extracellular, mitochondrion	11.23	21.69
PGSC0003DMT400058543	Potato	cytosol, plastid	20.37	21.44
PGSC0003DMT400030683	Potato	mitochondrion	21.0	19.61
PGSC0003DMT400062372	Potato	plastid	20.79	19.38

Protein Annotations

KEGG:00860+5.4.3.8	EntrezGene:102593524	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4
InterPro:Aminotrans_3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0033014
GO:GO:0042286	InterPro:IPR015421	InterPro:IPR015422	UniProt:M1D5Y7	HAMAP:MF_00375	PFAM:PF00202
EnsemblPlantsGene:PGSC0003DMG400032546	PGSC:PGSC0003DMG400032546	EnsemblPlants:PGSC0003DMT400082447	ScanProsite:PS00600	PANTHER:PTHR43713	PANTHER:PTHR43713:SF2
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00713	UniParc:UPI0002967511
RefSeq:XP_006359299.1	SEG:seg	:	:	:	:

Description

Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400032546]

Coordinates

chr4:-:4817286..4821254

Molecular Weight (calculated)

51437.0 Da

IEP (calculated)

6.999

GRAVY (calculated)

-0.052

Length

481 amino acids

Sequence
(BLAST)

001: MAAVNGVGLS WPSKLTKTQT PKWGFSPSHR RCNPSSSSAA TIRMTASVDE KKKTFTLEKS EEAFSKAKEL MPGGVNSPVR AFKSVGGQPI IIDSVKGSRM
101: RDIDGNEYID YVGSWGPAII GHADDEVLAA LAETMKKGTS FGAPCLLENT LAEMVISAVP SIEMVRFVNS GTEACMGVLR LARAFTCRTK IIKFEGCYHG
201: HADPFLVKAG SGVATLGLPD SPGVPKAATI DTLTAPYNDI SAVESLFEEH KGEIAAVILE PVVGNAGFIP PKLEFLAAIR KITKENDALL IFDEVMTGFR
301: LAYGGAQEYF GITPDLTTLG KIIGGGLPVG AYGGRRDIME MVAPAGPMYQ AGTLSGNPLA MTAGIHTLKR LQGQGTYEHL DKITGELTQG ILDAGKKTGH
401: AMCGGFIRGM FGFFFADGPV YNFSDAKKSD TEKFGRFYRG MLEEGVYFAP SQFEAGFTSL AHTPEDIQRT IAAAEKVLKQ I

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.