Factsheet for Zm00001d038547_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22248	Sorghum	plastid	96.41	96.62
Os08t0532200-01	Rice	plastid	92.62	91.84
TraesCS7A01G260800.2	Wheat	plastid	89.66	90.04
TraesCS7D01G261800.1	Wheat	plastid	89.66	90.04
TraesCS7B01G158800.1	Wheat	plastid	89.03	89.41
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	89.66	82.85
TraesCS7D01G262000.1	Wheat	mitochondrion	57.59	82.23
HORVU7Hr1G054360.1	Barley	plastid	36.29	81.52
GSMUA_Achr6P07940_001	Banana	plastid	81.01	81.01
KRH51376	Soybean	plastid	77.43	78.76
KRH60678	Soybean	nucleus	77.22	77.87
CDY41519	Canola	plastid	77.64	77.8
CDY62883	Canola	plastid	77.64	77.8
Bra035836.1-P	Field mustard	plastid	77.64	77.8
Bra038646.1-P	Field mustard	plastid	77.43	77.59
CDY16715	Canola	plastid	77.22	77.38
CDX81186	Canola	plastid	77.22	77.38
AT3G48730.1	Thale cress	plastid	77.0	77.33
VIT_17s0000g00900.t01	Wine grape	plastid	77.0	77.17
AT5G63570.1	Thale cress	plastid	76.79	76.79
Solyc04g009200.2.1	Tomato	plastid	78.06	76.76
PGSC0003DMT400082447	Potato	cytosol	77.85	76.72
KRH17479	Soybean	plastid	52.11	59.52
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	5.91	26.17
Zm00001d038460_P007	Maize	plasma membrane	22.36	22.6
Zm00001d033228_P002	Maize	mitochondrion	23.0	22.34
Zm00001d043951_P001	Maize	cytosol	10.13	21.92
Zm00001d027861_P001	Maize	mitochondrion	21.94	21.76
Zm00001d029083_P001	Maize	extracellular	20.68	21.68
Zm00001d038453_P003	Maize	mitochondrion	23.0	21.41
Zm00001d035443_P001	Maize	plastid	22.15	21.21
Zm00001d002326_P003	Maize	mitochondrion	21.73	19.88
Zm00001d026293_P001	Maize	mitochondrion	21.31	19.65
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	21.31	19.65
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	5.06	15.58
Zm00001d015444_P003	Maize	mitochondrion	6.96	15.57
Zm00001d015445_P008	Maize	cytosol	4.01	13.29

Protein Annotations

KEGG:00860+5.4.3.8	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4	ProteinID:AQK86897.1
InterPro:Aminotrans_3	UniProt:B7ZYW4	EMBL:BT054506	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0030170	GO:GO:0033014	GO:GO:0042286	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00375
PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR43713	PANTHER:PTHR43713:SF2	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00713	UniParc:UPI000191746A	EnsemblPlantsGene:Zm00001d038547	EnsemblPlants:Zm00001d038547_P001
EnsemblPlants:Zm00001d038547_T001	SEG:seg	:	:	:	:

Description

Glutamate-1-semialdehyde 21-aminomutase 2 chloroplastic

Coordinates

chr6:-:159734306..159738603

Molecular Weight (calculated)

50167.3 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.003

Length

474 amino acids

Sequence
(BLAST)

001: MAGAAAAAAV ASGVSARPAA PRRASAGRRA RLSVVRAAIS LEKGEKAYTV QKSEEIFNAA KELMPGGVNS PVRAFKSVGG QPVVFDSVKG SRMWDVDGNE
101: YIDYVGSWGP AIIGHADDKV NAALIETLKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG ALRLVRAFTG REKIIKFEGC YHGHADSFLV
201: KAGSGVATLG LPDSPGVPKG ATYETLTAPY NDVEAVKKLF EDNAGEIAAV FLEPVVGNAG FIPPQPGFLN ALRDLTRQDG ALLVFDEVMT GFRLSYGGAQ
301: EYFGITPDVT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLTEPGTY EYLDKITGEL VRGILDVGAK AGHEMCGGHI
401: RGMFGFFFTG GPVHNFGDAK KSDTEKFGRF YRGMLEEGVY FAPSQFEAGF TSLAHTSQDI EKTVEAAEKV LKRI

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.