CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	KRH42483	AT2G01950.1	19000166
AT5G63570.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51376	Soybean	plastid	96.38	97.21
VIT_17s0000g00900.t01	Wine grape	plastid	81.7	81.18
AT3G48730.1	Thale cress	plastid	78.51	78.18
CDY16715	Canola	plastid	78.09	77.59
CDY41519	Canola	plastid	78.09	77.59
CDY62883	Canola	plastid	78.09	77.59
Bra035836.1-P	Field mustard	plastid	77.87	77.38
Bra038646.1-P	Field mustard	plastid	77.87	77.38
KXG22248	Sorghum	plastid	77.87	77.38
Zm00001d038547_P001	Maize	plastid	77.87	77.22
CDX81186	Canola	plastid	77.66	77.17
AT5G63570.1	Thale cress	plastid	77.66	77.0
TraesCS7D01G261800.1	Wheat	plastid	77.02	76.69
TraesCS7A01G260800.2	Wheat	plastid	77.02	76.69
TraesCS7B01G158800.1	Wheat	plastid	76.38	76.06
Os08t0532200-01	Rice	plastid	77.23	75.94
GSMUA_Achr6P07940_001	Banana	plastid	75.11	74.47
TraesCS7D01G262000.1	Wheat	mitochondrion	51.7	73.19
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	76.6	70.18
HORVU7Hr1G054360.1	Barley	plastid	30.21	67.3
KRH17479	Soybean	plastid	55.53	62.89
KRH58670	Soybean	mitochondrion	24.04	24.09
KRH42566	Soybean	mitochondrion	23.83	23.98
KRH45041	Soybean	extracellular, mitochondrion	7.45	23.49
KRH65497	Soybean	mitochondrion	22.34	22.11
KRH76075	Soybean	mitochondrion	22.13	21.89
KRH35638	Soybean	cytosol	21.49	21.81
KRH48868	Soybean	nucleus	21.49	21.63
KRH59427	Soybean	mitochondrion	21.91	21.59
KRH43286	Soybean	mitochondrion	21.7	21.47
KRH00394	Soybean	mitochondrion	21.06	20.54
KRH31231	Soybean	mitochondrion	20.43	20.3
KRH04754	Soybean	cytosol	5.74	19.85
KRH24110	Soybean	mitochondrion	21.28	19.49
KRH29085	Soybean	cytosol	21.06	18.68
KRG97644	Soybean	mitochondrion	13.83	16.71

Protein Annotations

KEGG:00860+5.4.3.8	EntrezGene:100790574	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4
EMBL:ACUP02002135	InterPro:Aminotrans_3	EnsemblPlantsGene:GLYMA_04G002900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0030170	GO:GO:0033014	GO:GO:0042286	UniProt:I1JSD2	InterPro:IPR015421	InterPro:IPR015422
EnsemblPlants:KRH60678	ProteinID:KRH60678	ProteinID:KRH60678.1	HAMAP:MF_00375	PFAM:PF00202	ScanProsite:PS00600
PANTHER:PTHR43713	PANTHER:PTHR43713:SF2	MetaCyc:PWY-5188	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	TIGRFAMs:TIGR00713	UniParc:UPI0001ED24A4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:227965..229998

Molecular Weight (calculated)

50045.3 Da

IEP (calculated)

6.416

GRAVY (calculated)

0.048

Length

470 amino acids

Sequence
(BLAST)

001: MAVSAITGAR LTLGIGLAIP LSSPTRSRTV AMAVSVDPKT DNKLTLTKSE EAFAAAKELM PGGVNSPVRA FKSVGGQPIV IDSVKGSRMW DIDGNEYIDY
101: VGSWGPAIIG HADDQVLSAL VETMKKGTSF GAPCLLENTL AELVINAVPS IEMVRFVNSG TEACMGALRL ARAYTGREKI IKFEGCYHGH ADPFLVKAGS
201: GVATLGLPDS PGVPKAATFE TLTAPYNDTA AVEKLFEANK GEIAAVFLEP VVGNAGFIVP KPDFHNFLRK ITKENNTLLV FDEVMTGFRL SYGGAQEYFG
301: ITPDITTLGK IIGGGLPVGA YGGRRDIMEK VAPAGPMYQA GTLSGNPLAM TAGIQTLQRI KEPGTYEYLD KITGELVQGI IEAGKRAGHA ICGGHIRGMF
401: GFFFTEGPVY NFADAKKSDT DKFARFFWGM LAEGVYLAPS QFEAGFTSLA HTSDDIKKTI AAAEKVFREI

Best Arabidopsis Sequence Match ( AT3G48730.1 )
(BLAST)

001: MAATLTGSGI ALGFSCSAKF SKRASSSSNR RCIKMSVSVE EKTKKFTLQK SEEAFNAAKN LMPGGVNSPV RAFKSVGGQP VVMDSAKGSR IRDIDGNEYI
101: DYVGSWGPAI IGHADDEVLA ALAETMKKGT SFGAPCLLEN VLAEMVISAV PSIEMVRFVN SGTEACMGVL RLARAFTGKQ KFIKFEGCYH GHANSFLVKA
201: GSGVATLGLP DSPGVPKAAT SDTLTAPYND IAAVEKLFEA NKGEIAAIIL EPVVGNSGFI TPKPEFIEGI RRITKDNGAL LIFDEVMTGF RLAYGGAQEY
301: FGITPDLTTL GKIIGGGLPV GAYGGRRDIM EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLSQPGTYEY LDKITKELTN GILEAGKKTG HAMCGGYISG
401: MFGFFFTEGP VYDFSDAKKS DTEKFGKFFR GMLEEGVYLA PSQFEAGFTS LAHTSEDIQF TIAAAEKVLS RL

Arabidopsis Description

GSA2Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42522]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.