CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35638	Soybean	cytosol	90.58	91.36
GSMUA_Achr11P...	Banana	cytosol	59.1	75.2
GSMUA_Achr9P04450_001	Banana	cytosol	63.17	73.57
Bra008453.1-P	Field mustard	plastid	68.31	71.21
CDY67620	Canola	mitochondrion, plastid	68.31	71.21
CDY37615	Canola	mitochondrion	68.31	71.21
PGSC0003DMT400058543	Potato	cytosol, plastid	69.16	70.68
VIT_19s0027g01790.t01	Wine grape	plastid	70.45	70.45
Solyc08g080370.2.1	Tomato	plastid	69.38	70.43
Bra035168.1-P	Field mustard	mitochondrion	67.67	70.07
AT1G80600.1	Thale cress	plastid	68.52	70.02
CDY39963	Canola	mitochondrion	67.45	69.84
CDX87325	Canola	mitochondrion	67.45	69.84
Os05t0129100-00	Rice	plastid	47.75	68.4
Os07t0461900-01	Rice	plastid	47.75	67.99
GSMUA_Achr5P28220_001	Banana	cytosol	33.83	65.02
TraesCS1D01G074600.1	Wheat	plastid	62.74	63.7
TraesCS1B01G090600.1	Wheat	plastid	62.53	63.48
TraesCS1A01G072200.1	Wheat	plastid	62.1	63.46
EES17651	Sorghum	plastid	61.24	61.37
HORVU1Hr1G015560.5	Barley	plastid	62.53	57.03
Zm00001d035443_P001	Maize	plastid	58.89	55.56
CDY68670	Canola	cytosol	50.32	52.69
Bra008457.1-P	Field mustard	cytosol, peroxisome, plastid	50.54	48.26
KRH45041	Soybean	extracellular, mitochondrion	9.64	30.2
KRH58670	Soybean	mitochondrion	29.34	29.21
KRH42566	Soybean	mitochondrion	28.69	28.69
KRH04754	Soybean	cytosol	8.35	28.68
KRH65497	Soybean	mitochondrion	27.84	27.37
KRH00394	Soybean	mitochondrion	27.84	26.97
KRH76075	Soybean	mitochondrion	27.41	26.95
KRH43286	Soybean	mitochondrion	26.98	26.53
KRH59427	Soybean	mitochondrion	26.98	26.42
KRH31231	Soybean	mitochondrion	26.12	25.79
KRG97644	Soybean	mitochondrion	19.7	23.65
KRH24110	Soybean	mitochondrion	25.48	23.2
KRH29085	Soybean	cytosol	25.27	22.26
KRH60678	Soybean	nucleus	21.63	21.49
KRH51376	Soybean	plastid	21.41	21.46
KRH17479	Soybean	plastid	16.27	18.31

Protein Annotations

EntrezGene:100797501	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.1.1.1.4	EMBL:ACUP02004300	InterPro:AcOrn/SuccOrn_fam
InterPro:Aminotrans_3	EnsemblPlantsGene:GLYMA_07G118300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006525	GO:GO:0008150
GO:GO:0008152	GO:GO:0008483	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016740
GO:GO:0030170	GO:GO:0042802	InterPro:IPR015421	InterPro:IPR015422	UniProt:K7L145	EnsemblPlants:KRH48868
ProteinID:KRH48868	ProteinID:KRH48868.1	HAMAP:MF_01107	PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600
PANTHER:PTHR11986	PANTHER:PTHR11986:SF79	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
TIGRFAMs:TIGR00707	UniParc:UPI000233893F	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:13387689..13392909

Molecular Weight (calculated)

50337.7 Da

IEP (calculated)

6.322

GRAVY (calculated)

0.083

Length

467 amino acids

Sequence
(BLAST)

001: MSSFYMSLNP SISQSCYKPK QFFNLEREST LVGRSPVIQI RCRRVVSACL NVDVDAPDSG KTALEKTKDV IEMEGKFLVG TYARTPVVLE RGEGCKLYDV
101: EGREYLDLSA GIAVNALGHG DADWLKAVVE QAGTLTHTSN IFHTIPQVEL AKRLVASSFA DRVFFANSGT EANEAAIKFA RKYQRDTTTD GKEPATEFIA
201: FSNCFHGRTL GALALTSKVQ YRTPFEPVMP GVTFLEYGNA QAAVELIKQG KIAAVFVEPI QGEGGIYSAT KEFLQSLHSA CDEAGALLVF DEVQCGLGRS
301: GFLWAHEAFG VFPDMMTLAK PLAGGLPIGA VLVTERVASS INYGDHGSTF AGNPLVCSAA LAVFDKISKP DFLSSVSKKG LYFKELLKQK LGGNQHVKEI
401: RGVGLIIGID LDVPASPFVD ACRNSGLLVL TAGKGNVVRL VPPLIITEKE LELAADILCK TLPVLDN

Best Arabidopsis Sequence Match ( AT1G80600.1 )
(BLAST)

001: MASLSQITLP RAPSSEIGLL RRRLERPIIR TRIGFNGRIA SVLTNAGDQA VSVKASVSQK VIEEEAKVIV GTYARAPVVL SSGKGCKLFD PEGKEYLDCA
101: SGIAVNALGH GDPDWLRAVT EQAGVLAHVS NVYYTIPQIE LAKRLVASSF ADRVFFCNSG TEANEAAIKF SRKFQRFTHP EDKEVATGFI AFTNSFHGRT
201: LGALALTSKE QYRTPFEPIM PGVTFLEYGN IQAATDLIRS GKIAAVFVEP IQGEGGIYSA TKEFLQSLRS ACDAAGSLLV FDEVQCGLGR TGLMWAYEAF
301: GVTPDIMTVA KPLAGGLPIG AVLVTEKVAE TINYGDHGST FAGSPLVCSA AIAVMDKVSK PSFLSSVSNK GRYFRDLLVK KLGGNSHVKE VRGEGLIIGV
401: ELDVPASSLV DACRDSGLLI LTAGKGNVVR IVPPLVISEE EIERAVEIMS QNLTALD

Arabidopsis Description

WIN1Acetylornithine aminotransferase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M8M7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.