Factsheet for Solyc08g080370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058543	Potato	cytosol, plastid	97.61	98.25
GSMUA_Achr11P...	Banana	cytosol	61.09	76.57
GSMUA_Achr9P04450_001	Banana	cytosol	65.22	74.81
VIT_19s0027g01790.t01	Wine grape	plastid	72.17	71.09
GSMUA_Achr5P28220_001	Banana	cytosol	36.74	69.55
CDY67620	Canola	mitochondrion, plastid	67.61	69.42
CDY39963	Canola	mitochondrion	68.04	69.4
KRH48868	Soybean	nucleus	70.43	69.38
AT1G80600.1	Thale cress	plastid	68.91	69.37
Bra035168.1-P	Field mustard	mitochondrion	67.83	69.18
Bra008453.1-P	Field mustard	plastid	67.17	68.97
CDY37615	Canola	mitochondrion	67.17	68.97
CDX87325	Canola	mitochondrion	67.61	68.96
KRH35638	Soybean	cytosol	69.35	68.9
Os05t0129100-00	Rice	plastid	47.83	67.48
Os07t0461900-01	Rice	plastid	47.39	66.46
TraesCS1A01G072200.1	Wheat	plastid	62.17	62.58
TraesCS1D01G074600.1	Wheat	plastid	62.17	62.17
TraesCS1B01G090600.1	Wheat	plastid	61.96	61.96
EES17651	Sorghum	plastid	61.96	61.16
HORVU1Hr1G015560.5	Barley	plastid	62.83	56.45
Zm00001d035443_P001	Maize	plastid	60.43	56.16
CDY68670	Canola	cytosol	50.22	51.79
Bra008457.1-P	Field mustard	cytosol, peroxisome, plastid	50.43	47.44
Solyc08g048450.2.1	Tomato	cytosol, plastid	27.61	29.88
Solyc10g076250.1.1	Tomato	mitochondrion	29.13	28.03
Solyc04g054310.2.1	Tomato	extracellular, plastid	26.96	26.22
Solyc08g014610.2.1	Tomato	cytosol	25.22	25.33
Solyc12g006470.1.1	Tomato	extracellular, nucleus	24.57	24.67
Solyc07g043310.2.1	Tomato	nucleus	25.22	22.52
Solyc12g006450.1.1	Tomato	plastid	24.78	22.09
Solyc04g009200.2.1	Tomato	plastid	21.74	20.75

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.1.1.1.4	InterPro:AcOrn/SuccOrn_fam	InterPro:Aminotrans_3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006525	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0042802	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4CP37	HAMAP:MF_01107	PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600
PANTHER:PTHR11986	PANTHER:PTHR11986:SF79	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc08g080370.2	EnsemblPlants:Solyc08g080370.2.1	TIGRFAMs:TIGR00707	UniParc:UPI000276B8D4	SEG:seg	:

Description

Acetylornithine aminotransferase, chloroplastic/mitochondrial [Source:Projected from Arabidopsis thaliana (AT1G80600) UniProtKB/Swiss-Prot;Acc:Q9M8M7]

Coordinates

chr8:+:63674952..63678640

Molecular Weight (calculated)

49002.6 Da

IEP (calculated)

6.352

GRAVY (calculated)

0.082

Length

460 amino acids

Sequence
(BLAST)

001: MSSSSTFFLT NSFSSVSGST HLRRLFNNVR YGSGGGGGGV RIAASLNVEV QAPDLSKEVM DESNKVFVGT YARAPLVLSS GKGCKLYDIE GREYLDLTSG
101: IAVNALGHGD SDWIRAVTEQ ANVLTHVSNL YYTLPQLELA KRLVANSFAD RVFLSNSGTE ANEAAIKFAR KFQRFSHPDE KQPPVEFIAF SNCFHGRTMG
201: AVALTSKEYY RSPFEPIMPG VTFLEYGNVQ AAKELIQSGK IAAVFVEPIQ GEGGIYSATQ EFLQALRTAC DSAGSLLVFD EVQCGLGRTG HLWAHEAYGI
301: YPDIMTLAKP LAGGLPIGAV LVTERVAAAI NYGDHGSTFA GGPLVCNAAV AVLDKISGPG FLASVAKKGQ DFKELLVKKL GGNSHVRDVR GVGLIIGIDL
401: DVPASPLVEA CQQSGLLVLT AGKGNVVRLV PPLTITEQEL DHAAEILFNC LPVLDKTANN

Best Arabidopsis Sequence Match ( AT1G80600.1 )
(BLAST)

001: MASLSQITLP RAPSSEIGLL RRRLERPIIR TRIGFNGRIA SVLTNAGDQA VSVKASVSQK VIEEEAKVIV GTYARAPVVL SSGKGCKLFD PEGKEYLDCA
101: SGIAVNALGH GDPDWLRAVT EQAGVLAHVS NVYYTIPQIE LAKRLVASSF ADRVFFCNSG TEANEAAIKF SRKFQRFTHP EDKEVATGFI AFTNSFHGRT
201: LGALALTSKE QYRTPFEPIM PGVTFLEYGN IQAATDLIRS GKIAAVFVEP IQGEGGIYSA TKEFLQSLRS ACDAAGSLLV FDEVQCGLGR TGLMWAYEAF
301: GVTPDIMTVA KPLAGGLPIG AVLVTEKVAE TINYGDHGST FAGSPLVCSA AIAVMDKVSK PSFLSSVSNK GRYFRDLLVK KLGGNSHVKE VRGEGLIIGV
401: ELDVPASSLV DACRDSGLLI LTAGKGNVVR IVPPLVISEE EIERAVEIMS QNLTALD

Arabidopsis Description

WIN1Acetylornithine aminotransferase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M8M7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.