Factsheet for Solyc04g054310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

mitochondrion 8
peroxisome 2

Predictors

GFP

MS/MS

Papers

plastid: 26371478
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033328	Potato	extracellular	95.77	95.77
GSMUA_Achr10P...	Banana	peroxisome	74.84	83.89
VIT_07s0031g01330.t01	Wine grape	mitochondrion	80.76	80.93
CDX90347	Canola	mitochondrion	80.97	80.46
CDY63451	Canola	mitochondrion	80.13	79.62
Bra011843.1-P	Field mustard	mitochondrion	79.7	79.2
CDY41995	Canola	mitochondrion	79.7	79.2
CDY42643	Canola	mitochondrion	79.49	78.99
AT4G39660.1	Thale cress	mitochondrion	79.49	78.99
KRH43286	Soybean	mitochondrion	79.07	78.74
KRH59427	Soybean	mitochondrion	78.22	77.57
KRH31231	Soybean	mitochondrion	77.17	77.17
TraesCS4A01G015900.1	Wheat	mitochondrion	77.17	76.2
HORVU4Hr1G075360.5	Barley	mitochondrion	76.74	75.78
TraesCS4D01G286900.1	Wheat	mitochondrion	76.74	75.78
KXG40078	Sorghum	mitochondrion	76.32	75.37
TraesCS4B01G288100.1	Wheat	mitochondrion	76.32	75.37
Zm00001d027861_P001	Maize	mitochondrion	76.11	75.31
Os03t0171900-01	Rice	mitochondrion	75.26	73.25
KRG97644	Soybean	mitochondrion	57.72	70.18
Solyc10g076250.1.1	Tomato	mitochondrion	60.25	59.62
Bra010671.1-P	Field mustard	mitochondrion	78.86	42.39
Solyc08g080370.2.1	Tomato	plastid	26.22	26.96
Solyc12g006470.1.1	Tomato	extracellular, nucleus	24.1	24.89
Solyc08g048450.2.1	Tomato	cytosol, plastid	22.2	24.71
Solyc08g014610.2.1	Tomato	cytosol	23.68	24.45
Solyc12g006450.1.1	Tomato	plastid	25.79	23.64
Solyc07g043310.2.1	Tomato	nucleus	23.47	21.55
Solyc04g009200.2.1	Tomato	plastid	21.78	21.37

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	InterPro:Aminotrans_3	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0008453	GO:GO:0008483	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0019544	GO:GO:0030170	GO:GO:0042802	GO:GO:0046686	InterPro:IPR015421	InterPro:IPR015422
UniProt:K4BSI6	PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF77
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc04g054310.2	EnsemblPlants:Solyc04g054310.2.1
UniParc:UPI0002765623	SEG:seg	:	:	:	:

Description

Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT4G39660) UniProtKB/Swiss-Prot;Acc:Q940M2]

Coordinates

chr4:+:52291023..52296441

Molecular Weight (calculated)

51711.5 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.148

Length

473 amino acids

Sequence
(BLAST)

001: MALQRKLING CAGITKLRWF SNEGLRHFSG QVAAPTELPP FDYQPKPYKG PLADAVLEKR RKFLGPSLFY FYEKPLNIVE GKMQYLYDEN GKRYLDAFAG
101: IVTVSCGHCH PEVLNAIIEQ SKLLQHATTI YLHHAIADFA EALASKMPGN LKVVYFVNSG TEANELAMLM ARLYSGHLNM IALRNAYHGG SSNTIGLTAL
201: NTWKYPIPQG EIHHVMNPNP YRGAFGSDAK RYAEDVQNHI DHGTSGKVAG FIAETIQGVG GTVELAPGYL KLVYDIVRKA GGVCIADEVQ TGFGRTGSHY
301: WGFQTQGVTP DIVTMAKGIG NGLPLGAVVT TPEIASVMAQ KIQFNTYGGN PVCSAGGHAV LKVIEKEQRQ KHCAEVGSHL FGRLRDLEKR YDIIGDVRGR
401: GLMVGIELVT DRKEKTPAKA ETGVLFEKLK DLGVLVGKGG IHGNVFRIKP PMCFSKDDAD FLVDALDYSL SKL

Best Arabidopsis Sequence Match ( AT4G39660.1 )
(BLAST)

001: MALQRQLLKR ATSDIYHRRA ISLLRTDFST SPSIADAPPH IPPFVHQPRP YKGPSADEVL QKRKKFLGPS LFHYYQKPLN IVEGKMQYLY DESGRRYLDA
101: FAGIVTVSCG HCHPDILNAI TEQSKLLQHA TTIYLHHAIG DFAEALAAKM PGNLKVVYFV NSGSEANELA MMMARLYTGS LEMISLRNAY HGGSSNTIGL
201: TALNTWKYPL PQGEIHHVVN PDPYRGVFGS DGSLYAKDVH DHIEYGTSGK VAGFIAETIQ GVGGAVELAP GYLKSVYEIV RNAGGVCIAD EVQTGFGRTG
301: SHYWGFQTQD VVPDIVTMAK GIGNGLPLGA VVTTPEIASV LASKILFNTF GGNPVCSAGG LAVLNVIDKE KRQEHCAEVG SHLIQRLKDV QKRHDIIGDV
401: RGRGLMVGIE LVSDRKDKTP AKAETSVLFE QLRELGILVG KGGLHGNVFR IKPPMCFTKD DADFLVDALD YSISRL

Arabidopsis Description

AGT2Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940M2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.