Factsheet for Solyc12g006470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

cytosol 2
nucleus 1
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	65.07	97.39
Solyc08g014610.2.1	Tomato	cytosol	86.68	86.68
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	16.81	71.96
Solyc12g006450.1.1	Tomato	plastid	78.38	69.57
Bra031332.1-P	Field mustard	mitochondrion	74.89	68.6
CDY10619	Canola	mitochondrion	74.89	68.6
CDY37389	Canola	mitochondrion	74.89	68.6
Solyc07g043310.2.1	Tomato	nucleus	77.07	68.54
KRH24110	Soybean	mitochondrion	76.42	68.23
CDY58748	Canola	mitochondrion	74.02	68.07
CDY10622	Canola	golgi	70.09	68.01
VIT_03s0017g01760.t01	Wine grape	mitochondrion	77.95	67.74
Bra023845.1-P	Field mustard	mitochondrion	74.02	67.66
GSMUA_Achr5P00340_001	Banana	mitochondrion	74.45	67.52
CDY39506	Canola	mitochondrion	74.02	67.0
AT3G22200.2	Thale cress	mitochondrion	74.02	66.08
Os04t0614500-01	Rice	plastid	71.4	65.79
TraesCS7D01G341900.2	Wheat	mitochondrion	72.71	65.55
KRH29085	Soybean	cytosol	75.76	65.47
Os02t0112900-00	Rice	cytosol	69.0	65.42
EES14702	Sorghum	mitochondrion	72.27	65.03
TraesCS7B01G246800.1	Wheat	mitochondrion	72.05	64.96
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	21.83	64.94
Os04t0614600-01	Rice	mitochondrion	72.93	64.73
Os08t0205900-01	Rice	mitochondrion	72.05	64.71
EES11419	Sorghum	mitochondrion	72.05	64.58
HORVU2Hr1G098880.1	Barley	mitochondrion	71.83	64.38
Bra031335.1-P	Field mustard	mitochondrion	70.52	64.34
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	72.05	64.2
TraesCS2A01G421400.1	Wheat	mitochondrion	71.18	63.8
TraesCS2B01G440400.1	Wheat	golgi	71.18	63.8
Zm00001d015445_P008	Maize	cytosol	19.87	63.64
TraesCS2D01G418400.2	Wheat	mitochondrion	70.96	63.6
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	66.81	63.22
Zm00001d026293_P001	Maize	mitochondrion	70.74	63.03
TraesCS7A01G334200.1	Wheat	mitochondrion	70.96	62.98
Zm00001d002326_P003	Maize	mitochondrion	70.74	62.55
TraesCS7A01G373400.1	Wheat	plastid	62.01	60.43
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	72.49	59.18
Zm00001d015444_P003	Maize	mitochondrion	26.42	57.08
Bra031334.1-P	Field mustard	cytosol	24.89	54.03
CDY10621	Canola	extracellular, plastid	26.2	50.85
Solyc08g048450.2.1	Tomato	cytosol, plastid	25.55	27.53
Solyc08g080370.2.1	Tomato	plastid	24.67	24.57
Solyc04g054310.2.1	Tomato	extracellular, plastid	24.89	24.1
Solyc10g076250.1.1	Tomato	mitochondrion	24.45	23.43
Solyc04g009200.2.1	Tomato	plastid	22.05	20.95

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	InterPro:Aminotrans_3	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	GO:GO:0034387	GO:GO:0102351	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4DBI4	PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR42684
PANTHER:PTHR42684:SF5	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc12g006470.1
EnsemblPlants:Solyc12g006470.1.1	UniParc:UPI000276A7C6	:	:	:	:

Description

No Description!

Coordinates

chr12:+:956774..962587

Molecular Weight (calculated)

50637.1 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.125

Length

458 amino acids

Sequence
(BLAST)

001: MAKTNGFMGH DMLAPFTAAW MIDMGPLVID KAEGSYVYDV NGKKYLDSLS GLWCSVLGGS EPRLIEAANK QLNKLAFYHS FWNRTTKPSL DLAKELINMF
101: TANKMGKVFF TSSGSEANDT QVKLVWYYNN AIGRPNKKKI ISRKNAYHGS TYMTAGLSGL PSLHLKFDLP PPYILHTDCP HYWNYHLPGE TEEEYSTRLA
201: NNLENLILKE GPETVAAFIA EPVMGGAGVI IPPATYFEKI QAVLKKYDIL FIADEVICGF GRLGTMFGCD KYNIKPDLVS IAKALSGGYI PIGAVLVSEE
301: ISKVIMSQSN QLGVFCHGFT YSGHPVACAV ALEALKIYKE KNITEVVNKL SPKFQEGLKA FIDSPIIGEI RGTGLVLSTE FVDNKSPNDP FPPEWGVGTY
401: FGSQCQKHGM LVSFSGDHVN MAPPFTLSLE ELDEMISIYG KALKDTEKRV EELKSQKK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.