Factsheet for Zm00001d026293_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11419	Sorghum	mitochondrion	95.33	95.89
Zm00001d002326_P003	Maize	mitochondrion	94.75	94.02
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	18.09	86.92
TraesCS2B01G440400.1	Wheat	golgi	85.8	86.3
TraesCS2A01G421400.1	Wheat	mitochondrion	85.21	85.71
Os04t0614600-01	Rice	mitochondrion	85.99	85.66
HORVU2Hr1G098880.1	Barley	mitochondrion	84.82	85.32
TraesCS2D01G418400.2	Wheat	mitochondrion	84.24	84.74
GSMUA_Achr5P00340_001	Banana	mitochondrion	78.4	79.8
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	78.21	78.21
CDY58748	Canola	mitochondrion	73.35	75.7
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	22.57	75.32
Bra023845.1-P	Field mustard	mitochondrion	73.15	75.05
KRH24110	Soybean	mitochondrion	74.9	75.05
CDY39506	Canola	mitochondrion	73.35	74.51
PGSC0003DMT400030683	Potato	mitochondrion	74.51	74.37
Solyc07g043310.2.1	Tomato	nucleus	74.32	74.17
CDY37389	Canola	mitochondrion	71.98	74.0
Bra031332.1-P	Field mustard	mitochondrion	71.79	73.8
CDY10619	Canola	mitochondrion	71.79	73.8
Zm00001d015445_P008	Maize	cytosol	20.43	73.43
VIT_03s0017g01760.t01	Wine grape	mitochondrion	74.51	72.68
KRH29085	Soybean	cytosol	74.32	72.08
PGSC0003DMT400064961	Potato	cytosol	64.2	72.05
CDY10622	Canola	golgi	66.15	72.03
Solyc08g014610.2.1	Tomato	cytosol	64.01	71.83
Solyc12g006470.1.1	Tomato	extracellular, nucleus	63.03	70.74
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	67.7	70.59
AT3G22200.2	Thale cress	mitochondrion	70.43	70.57
Solyc12g006450.1.1	Tomato	plastid	70.43	70.16
PGSC0003DMT400062372	Potato	plastid	70.04	69.77
Bra031335.1-P	Field mustard	mitochondrion	66.93	68.53
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	40.66	68.3
Zm00001d015444_P003	Maize	mitochondrion	27.24	66.04
Bra031334.1-P	Field mustard	cytosol	22.37	54.5
CDY10621	Canola	extracellular, plastid	24.32	52.97
Zm00001d027861_P001	Maize	mitochondrion	22.57	24.27
Zm00001d038460_P007	Maize	plasma membrane	21.98	24.09
Zm00001d033228_P002	Maize	mitochondrion	22.18	23.36
Zm00001d029083_P001	Maize	extracellular	20.43	23.23
Zm00001d038453_P003	Maize	mitochondrion	22.18	22.4
Zm00001d038547_P001	Maize	plastid	19.65	21.31
Zm00001d035443_P001	Maize	plastid	20.23	21.01
Zm00001d043951_P001	Maize	cytosol	8.37	19.63

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	ProteinID:AQK46099.1	InterPro:Aminotrans_3	UniProt:B4G0T5
EMBL:BT042973	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008483	GO:GO:0016740
GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600
PANTHER:PTHR42684	PANTHER:PTHR42684:SF5	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI00017B7754	EnsemblPlantsGene:Zm00001d026293	EnsemblPlants:Zm00001d026293_P001	EnsemblPlants:Zm00001d026293_T001	:	:

Description

Gamma-aminobutyrate transaminase POP2 mitochondrial

Coordinates

chr10:+:143077541..143089471

Molecular Weight (calculated)

56231.3 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.137

Length

514 amino acids

Sequence
(BLAST)

001: MTIARRLLRS NASAQAISLL KHVTGTASLQ GHAHSPLDAS VRHFSSAPSA QSDTTEENGF KGHGMLAPFT AGWQSNDLHP LIIERSEGSY VYDINGNKYL
101: DSLAGLWCTA LGGSEPRLVK AATEQLNNLP FYHSFWNRTT KPSLDLAQEI LSMFTAREMG KVFFTNSGSE ANDSQVKLVW YYNNALGRPD KKKFIARSKA
201: YHGSTLISAS LTGLPALHQK FDLPAPFVLH TDCPHYWRYH LPGETEEEFA TRLATNLENL ILKEGPETIA AFIAEPVMGA GGVIPPPKTY FDKVQAVVKK
301: YDILFIADEV ITAFGRLGTM FGCDYYNIKP DLVSLAKALS NAYVPIGATL VSPEISEVIH SQSNKLGSFA HGFTYSGHPV ACAVAIEALK LYRERDIPGH
401: VKQIAPKFQD GIRALADSPI IGEIRGLGMI MGTEFTNNKS PADLFPAEWG VGAIFGEECQ KRGMLVRVAG DAIMMSPTLI MTPGEVDELV SIYGEALRAT
501: EERVSDLKMK SEKN

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.