Factsheet for Zm00001d029083_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	mitochondrion

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94889	Sorghum	mitochondrion	92.04	89.46
TraesCS4D01G170300.1	Wheat	mitochondrion	85.84	84.53
TraesCS4A01G137000.1	Wheat	mitochondrion	84.96	83.66
TraesCS4B01G167100.1	Wheat	mitochondrion	84.51	83.22
Os03t0338000-01	Rice	peroxisome	86.28	80.58
Zm00001d038460_P007	Maize	plasma membrane	75.44	72.71
GSMUA_Achr6P32610_001	Banana	mitochondrion	74.56	70.8
Zm00001d038453_P003	Maize	mitochondrion	76.99	68.37
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	71.9	68.13
KRH76075	Soybean	mitochondrion	70.8	67.37
KRH00394	Soybean	mitochondrion	71.46	67.01
VIT_06s0004g07660.t01	Wine grape	mitochondrion	70.8	66.95
KRH65497	Soybean	mitochondrion	69.47	66.11
CDY61531	Canola	mitochondrion	30.53	65.71
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	69.47	65.69
Solyc10g076250.1.1	Tomato	mitochondrion	69.03	65.27
CDY14465	Canola	cytosol	60.4	64.24
AT3G08860.1	Thale cress	mitochondrion	68.14	64.03
CDY00650	Canola	mitochondrion	65.71	63.19
Bra001341.1-P	Field mustard	mitochondrion, peroxisome	63.72	62.88
CDY00651	Canola	mitochondrion	65.27	62.77
CDX73944	Canola	mitochondrion	65.27	62.77
CDY54458	Canola	mitochondrion	65.49	62.45
Bra005111.1-P	Field mustard	mitochondrion	65.27	62.24
Bra000060.1-P	Field mustard	mitochondrion	65.27	61.97
Bra017119.1-P	Field mustard	mitochondrion	64.82	61.17
CDY54421	Canola	mitochondrion	64.38	60.5
CDY66720	Canola	mitochondrion	65.71	60.37
AT2G38400.2	Thale cress	mitochondrion	65.49	60.04
CDY71561	Canola	mitochondrion	29.42	59.91
CDY61533	Canola	peroxisome	24.56	59.36
Zm00001d043951_P001	Maize	cytosol	28.32	58.45
Zm00001d027861_P001	Maize	mitochondrion	59.73	56.49
CDY18386	Canola	mitochondrion	28.54	55.36
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	7.52	31.78
Zm00001d033228_P002	Maize	mitochondrion	25.89	23.98
Zm00001d035443_P001	Maize	plastid	25.22	23.03
Zm00001d038547_P001	Maize	plastid	21.68	20.68
Zm00001d002326_P003	Maize	mitochondrion	23.45	20.46
Zm00001d026293_P001	Maize	mitochondrion	23.23	20.43
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	21.46	18.87
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	6.19	18.18
Zm00001d015445_P008	Maize	cytosol	5.53	17.48
Zm00001d015444_P003	Maize	mitochondrion	7.96	16.98

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	UniProt:A0A1D6K2C6	InterPro:Aminotrans_3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	ProteinID:ONL97838.1	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF77
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI000844A58A	EnsemblPlantsGene:Zm00001d029083
EnsemblPlants:Zm00001d029083_P001	EnsemblPlants:Zm00001d029083_T001	SEG:seg	:	:	:

Description

alanine--glyoxylate aminotransferase1

Coordinates

chr1:+:57394910..57397707

Molecular Weight (calculated)

49194.2 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.014

Length

452 amino acids

Sequence
(BLAST)

001: MMMQLGARSL VRRFSRLAAA GAPAETTSAG VPRMPAFDHV PLPYDGPSAA DIARKRAEYL SPSLFHFYSK PLNIVEGKRQ YLYDEHGRRY LDAFAGIATV
101: CCGHCHPDVV DAITRQAKRL QHSTVLYLNH VIADFAEALA SKLPGDLKAR CWLIASCTDS VVFFTNSGTE ANELAILMAR LYTGSHDIIS LRNSYHGNAA
201: GTMGATAQKN WKFNVIQSGV HHAVNPDPYR GAFGSDAEKY VRDVQEIIEF GTTGQVAGFI SEAIQGVGGI VEVSPGYLPL AYDKVRKAGG LCIADEVQAG
301: FARVGSHFWG FETHGVVPDI VTMAKGIGNG IPLGAVVTTP EVAQVLTRRC YFNTFGGNPL CTAGGLAVLE VLEKERLQEN AFVVGSYLKD RLRGLQEKHE
401: IIGDVRGTGF MLGIELVTDR QLKTPAKDEI CHAMEHMKDF FVEVMDIALS KL

Best Arabidopsis Sequence Match ( AT3G08860.2 )
(BLAST)

001: MRKLTAVNSL LKRNNYLLPR HGSSQTAAQR TSSVRETETE TKLPKMPPFN YSPPPYDGPS TAEIIAKRRE FLSPALFHFY NTPLNIVEAK MQYVFDENGR
101: RYLDAFGGIA TVSCGHCHPE VVNSVVKQLK LINHSTILYL NHTISDFAEA LVSTLPGDLK VVFFTNSGTE ANELAMMMAR LYTGCNDIVS LRNSYHGNAA
201: ATMGATAQSN WKFNVVQSGV HHAINPDPYR GIFGSDGEKY ASDVHDLIQF GTSGQVAGFI GESIQGVGGI VELAPGYLPA AYDIVRKAGG VCIADEVQSG
301: FARTGTHFWG FQSHGVIPDI VTMAKGIGNG IPLGAVVTTP EIAGVLSRRS YFNTFGGNPM CTAAGHAVLR VLHEEKLQEN ANLVGSHLKR RLTLLKNKYE
401: LIGDVRGRGL MLGVEFVKDR DLKTPAKAET LHLMDQMKEM GVLVGKGGFY GNVFRITPPL CFTLSDAG

Arabidopsis Description

PYD4Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SR86]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.