Factsheet for PGSC0003DMT400030976

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

plastid 1
mitochondrion 6
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076250.1.1	Tomato	mitochondrion	96.86	96.86
GSMUA_Achr5P08560_001	Banana	peroxisome	73.43	80.5
Os05t0475400-02	Rice	peroxisome	64.64	79.03
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	78.45	78.62
CDY61533	Canola	peroxisome	30.33	77.54
VIT_06s0004g07660.t01	Wine grape	mitochondrion	77.41	77.41
GSMUA_Achr8P17090_001	Banana	peroxisome	71.34	76.29
KRH76075	Soybean	mitochondrion	75.1	75.58
KRH65497	Soybean	mitochondrion	73.64	74.11
Zm00001d038460_P007	Maize	plasma membrane	72.59	73.99
GSMUA_Achr6P32610_001	Banana	mitochondrion	73.64	73.95
TraesCS4A01G137000.1	Wheat	mitochondrion	70.71	73.64
TraesCS4D01G170300.1	Wheat	mitochondrion	70.5	73.42
EES19688	Sorghum	mitochondrion	73.43	73.28
EER94889	Sorghum	mitochondrion	71.13	73.12
TraesCS4B01G167100.1	Wheat	mitochondrion	70.08	72.98
KRH00394	Soybean	mitochondrion	73.43	72.82
AT3G08860.1	Thale cress	mitochondrion	73.22	72.77
TraesCS1B01G308900.1	Wheat	mitochondrion	72.59	72.75
TraesCS1D01G292100.1	Wheat	mitochondrion	72.59	72.75
TraesCS1A01G299100.1	Wheat	mitochondrion	72.38	72.54
CDY14465	Canola	cytosol	64.23	72.24
Os03t0338000-01	Rice	peroxisome	72.8	71.9
Bra000060.1-P	Field mustard	mitochondrion	71.34	71.64
CDY00650	Canola	mitochondrion	70.29	71.49
CDY54458	Canola	mitochondrion	70.71	71.31
CDX73944	Canola	mitochondrion	70.08	71.28
AT2G38400.2	Thale cress	mitochondrion	73.43	71.2
CDY00651	Canola	mitochondrion	69.87	71.06
Bra005111.1-P	Field mustard	mitochondrion	70.29	70.89
CDY18386	Canola	mitochondrion	34.52	70.82
Bra017119.1-P	Field mustard	mitochondrion	70.71	70.56
Bra001341.1-P	Field mustard	mitochondrion, peroxisome	67.36	70.31
CDY66720	Canola	mitochondrion	71.97	69.92
Zm00001d029083_P001	Maize	extracellular	65.69	69.47
CDY54421	Canola	mitochondrion	69.87	69.44
HORVU1Hr1G070220.2	Barley	mitochondrion	70.92	68.62
Zm00001d038453_P003	Maize	mitochondrion	73.01	68.57
CDY61531	Canola	mitochondrion	29.92	68.1
CDY71561	Canola	mitochondrion	28.45	61.26
PGSC0003DMT400033328	Potato	extracellular	60.25	60.89
Zm00001d043951_P001	Maize	cytosol	27.82	60.73
GSMUA_Achr1P17230_001	Banana	peroxisome	28.24	59.73
PGSC0003DMT400058543	Potato	cytosol, plastid	27.82	29.1
PGSC0003DMT400076803	Potato	cytosol, extracellular, mitochondrion	14.44	27.71
PGSC0003DMT400064961	Potato	cytosol	24.06	25.11
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	15.48	24.18
PGSC0003DMT400062372	Potato	plastid	24.27	22.48
PGSC0003DMT400082447	Potato	cytosol	22.18	22.04
PGSC0003DMT400030683	Potato	mitochondrion	23.64	21.94

Protein Annotations

EntrezGene:102589300	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	InterPro:Aminotrans_3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0007154	GO:GO:0008150	GO:GO:0008483	GO:GO:0009605
GO:GO:0009987	GO:GO:0009991	GO:GO:0016740	GO:GO:0030170	GO:GO:0043562	InterPro:IPR015421
InterPro:IPR015422	UniProt:M1AV12	PFAM:PF00202	EnsemblPlantsGene:PGSC0003DMG400011868	PGSC:PGSC0003DMG400011868	EnsemblPlants:PGSC0003DMT400030976
PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF77	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI00029668EE	RefSeq:XP_006363610.1	SEG:seg	:

Description

Alanine-glyoxylate aminotransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400011868]

Coordinates

chr10:+:49354139..49358422

Molecular Weight (calculated)

52218.9 Da

IEP (calculated)

7.387

GRAVY (calculated)

-0.074

Length

478 amino acids

Sequence
(BLAST)

001: MQRFVTARAK WVGELRGLSQ RCYSQFGLAS QKDDDMIINP RMPHFDYSPP PYNGPSADEI LSKRKEFLSP SMFYFYEKNP LHLVHGKMQY LFDSNGRRYL
101: DAFGGIATVS CGHCHPDVVE AIVNQTKRLQ HSTILYLNNA ITDFAEALAS KLPGDLKVVF FTNSGTEANE LAIMMARLYT GCHDIISLRN AYHGNAAATM
201: STTGQSVWKF NVVQSGVHHA INPDPYRGVF GSDGEKYAKD VEDLILFGTS GRVAAFMSEA IQGVGGIVEL APGYLPAAYS AVRKAGGLCI ADEVQSGFAR
301: TGSHFWGFEN QGVVPDIVTM AKGIGNGIPL GAVVTTPEIA EVLCHSNYFN TFGGNPVCTS AGLAVLRVIE KENLQENAHV VGSYLKERLM AIKNKHEIVG
401: DVRGRGLLLG VELVTDRKLK TPAKAETLHI MDKMKEMGVL VGKGGFRGNV FRITPPLCFT KEDADFVADV MDCAMSKI

Best Arabidopsis Sequence Match ( AT3G08860.1 )
(BLAST)

001: MRKLTAVNSL LKRNNYLLPR HGSSQTAAQR TSSVRETETE TKLPKMPPFN YSPPPYDGPS TAEIIAKRRE FLSPALFHFY NTPLNIVEAK MQYVFDENGR
101: RYLDAFGGIA TVSCGHCHPE VVNSVVKQLK LINHSTILYL NHTISDFAEA LVSTLPGDLK VVFFTNSGTE ANELAMMMAR LYTGCNDIVS LRNSYHGNAA
201: ATMGATAQSN WKFNVVQSGV HHAINPDPYR GIFGSDGEKY ASDVHDLIQF GTSGQVAGFI GESIQGVGGI VELAPGYLPA AYDIVRKAGG VCIADEVQSG
301: FARTGTHFWG FQSHGVIPDI VTMAKGIGNG IPLGAVVTTP EIAGVLSRRS YFNTFGGNPM CTAAGHAVLR VLHEEKLQEN ANLVGSHLKR RLTLLKNKYE
401: LIGDVRGRGL MLGVEFVKDR DLKTPAKAET LHLMDQMKEM GVLVGKGGFY GNVFRITPPL CFTLSDADFL VDVMDHAMSK M

Arabidopsis Description

PYD4Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SR86]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.