Factsheet for Zm00001d038453_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038460_P007	Maize	plasma membrane	90.37	98.08
EES19688	Sorghum	mitochondrion	91.36	97.08
Os05t0475400-02	Rice	peroxisome	72.5	94.37
TraesCS1B01G308900.1	Wheat	mitochondrion	85.27	90.99
TraesCS1D01G292100.1	Wheat	mitochondrion	85.07	90.78
TraesCS1A01G299100.1	Wheat	mitochondrion	84.87	90.57
HORVU1Hr1G070220.2	Barley	mitochondrion	82.71	85.22
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	72.3	77.15
Zm00001d029083_P001	Maize	extracellular	68.37	76.99
KRH76075	Soybean	mitochondrion	69.16	74.11
VIT_06s0004g07660.t01	Wine grape	mitochondrion	69.55	74.06
KRH65497	Soybean	mitochondrion	68.57	73.47
Solyc10g076250.1.1	Tomato	mitochondrion	68.76	73.22
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	68.57	73.01
CDY61533	Canola	peroxisome	26.33	71.66
KRH00394	Soybean	mitochondrion	67.78	71.58
AT3G08860.1	Thale cress	mitochondrion	67.19	71.1
Bra001341.1-P	Field mustard	mitochondrion, peroxisome	63.85	70.96
CDY00650	Canola	mitochondrion	65.42	70.85
CDY14465	Canola	cytosol	59.14	70.82
CDY00651	Canola	mitochondrion	65.03	70.43
CDX73944	Canola	mitochondrion	65.03	70.43
Bra000060.1-P	Field mustard	mitochondrion	65.42	69.96
Zm00001d043951_P001	Maize	cytosol	29.86	69.41
Bra017119.1-P	Field mustard	mitochondrion	65.03	69.1
CDY54458	Canola	mitochondrion	64.05	68.78
CDY54421	Canola	mitochondrion	64.64	68.4
CDY66720	Canola	mitochondrion	66.01	68.29
Bra005111.1-P	Field mustard	mitochondrion	63.46	68.14
CDY61531	Canola	mitochondrion	28.09	68.1
AT2G38400.2	Thale cress	mitochondrion	65.82	67.95
GSMUA_Achr1P17230_001	Banana	peroxisome	29.27	65.93
CDY18386	Canola	mitochondrion	29.67	64.81
CDY71561	Canola	mitochondrion	28.09	64.41
Zm00001d027861_P001	Maize	mitochondrion	56.78	60.46
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	5.89	28.04
Zm00001d033228_P002	Maize	mitochondrion	24.36	25.41
Zm00001d035443_P001	Maize	plastid	24.56	25.25
Zm00001d015445_P008	Maize	cytosol	6.88	24.48
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	7.27	24.03
Zm00001d038547_P001	Maize	plastid	21.41	23.0
Zm00001d002326_P003	Maize	mitochondrion	22.59	22.2
Zm00001d026293_P001	Maize	mitochondrion	22.4	22.18
Zm00001d015444_P003	Maize	mitochondrion	9.04	21.7
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	21.02	20.82

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	UniProt:A0A1D6M6F5	ProteinID:AQK86665.1	InterPro:Aminotrans_3
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR11986
PANTHER:PTHR11986:SF77	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0002213502
EnsemblPlantsGene:Zm00001d038453	EnsemblPlants:Zm00001d038453_P003	EnsemblPlants:Zm00001d038453_T003	SEG:seg	:	:

Description

Putative aminotransferase class III superfamily protein

Coordinates

chr6:-:157518291..157524838

Molecular Weight (calculated)

55113.3 Da

IEP (calculated)

8.623

GRAVY (calculated)

-0.110

Length

509 amino acids

Sequence
(BLAST)

001: MALLQHQPAT HTPARRFCRA PTNRAGRKPP QHMQRLASSR RLLQAALAPA RANSSLSAAA VAAPAPANGA FPKMPAFDYT PPPYDGPRAE EIFRKRAQFL
101: SPSLFHFYDR PLNIVEGKMQ YLFDEDGRRY LDAFGGIATV CCGHCHPDVV EAIVNQAKRI QHSTVLYLNH AIADFAEALA SKMPGDLKVV FFTNSGTEAN
201: ELALMIARLY TGCNDIISLR NGYHGNAAGT MGATAQSNWK FNVVQTGVHH ALNPDPFRGA FGSDGEKYAR DVQEIIEFGT TGRVGGFISE AIQGVGGIVE
301: LAPGYLPVAY SMVRKAGGLC IADEVQAGVA RTGSHFWGFE GHGVIPDIVT MAKGIGNGIP IGAVVTTPEI AQVLTRRSYF NTFGGNPVST AGGHAVLKVL
401: EKEKLQENAF VVGSYLKEQL NNLKDKHEII GDVRGKGFLL GVELVTDHEK KTPAKAEISR VMNHMKDMGV LVGKGGFYGN VFRITPPLCF TKEDSDFFIE
501: VMDIALSKL

Best Arabidopsis Sequence Match ( AT3G08860.1 )
(BLAST)

001: MRKLTAVNSL LKRNNYLLPR HGSSQTAAQR TSSVRETETE TKLPKMPPFN YSPPPYDGPS TAEIIAKRRE FLSPALFHFY NTPLNIVEAK MQYVFDENGR
101: RYLDAFGGIA TVSCGHCHPE VVNSVVKQLK LINHSTILYL NHTISDFAEA LVSTLPGDLK VVFFTNSGTE ANELAMMMAR LYTGCNDIVS LRNSYHGNAA
201: ATMGATAQSN WKFNVVQSGV HHAINPDPYR GIFGSDGEKY ASDVHDLIQF GTSGQVAGFI GESIQGVGGI VELAPGYLPA AYDIVRKAGG VCIADEVQSG
301: FARTGTHFWG FQSHGVIPDI VTMAKGIGNG IPLGAVVTTP EIAGVLSRRS YFNTFGGNPM CTAAGHAVLR VLHEEKLQEN ANLVGSHLKR RLTLLKNKYE
401: LIGDVRGRGL MLGVEFVKDR DLKTPAKAET LHLMDQMKEM GVLVGKGGFY GNVFRITPPL CFTLSDADFL VDVMDHAMSK M

Arabidopsis Description

PYD4Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SR86]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.