Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002326_P003 | Maize | mitochondrion | 87.85 | 18.15 |
| Zm00001d026293_P001 | Maize | mitochondrion | 86.92 | 18.09 |
| Solyc08g014610.2.1 | Tomato | cytosol | 74.77 | 17.47 |
| Os02t0112900-00 | Rice | cytosol | 77.57 | 17.18 |
| Zm00001d049380_P011 | Maize | endoplasmic reticulum, mitochondrion | 82.24 | 17.12 |
| Os04t0614500-01 | Rice | plastid | 79.44 | 17.1 |
| PGSC0003DMT400064961 | Potato | cytosol | 72.9 | 17.03 |
| GSMUA_Achr5P00340_001 | Banana | mitochondrion | 79.44 | 16.83 |
| Solyc12g006470.1.1 | Tomato | extracellular, nucleus | 71.96 | 16.81 |
| TraesCS7A01G373400.1 | Wheat | plastid | 72.9 | 16.6 |
| TraesCS7B01G253600.1 | Wheat | cytosol, nucleus, peroxisome | 74.77 | 16.53 |
| CDY10622 | Canola | golgi | 70.09 | 15.89 |
| CDY58748 | Canola | mitochondrion | 72.9 | 15.66 |
| Bra031332.1-P | Field mustard | mitochondrion | 72.9 | 15.6 |
| CDY37389 | Canola | mitochondrion | 72.9 | 15.6 |
| CDY10619 | Canola | mitochondrion | 72.9 | 15.6 |
| Bra023845.1-P | Field mustard | mitochondrion | 71.96 | 15.37 |
| CDY39506 | Canola | mitochondrion | 71.96 | 15.22 |
| VIT_03s0017g01720.t01 | Wine grape | cytosol, peroxisome, plastid | 70.09 | 15.21 |
| KRH24110 | Soybean | mitochondrion | 72.9 | 15.2 |
| PGSC0003DMT400062372 | Potato | plastid | 72.9 | 15.12 |
| VIT_03s0017g01760.t01 | Wine grape | mitochondrion | 73.83 | 14.99 |
| PGSC0003DMT400030683 | Potato | mitochondrion | 71.96 | 14.95 |
| Bra031335.1-P | Field mustard | mitochondrion | 70.09 | 14.94 |
| Solyc12g006450.1.1 | Tomato | plastid | 71.96 | 14.92 |
| AT3G22200.2 | Thale cress | mitochondrion | 71.03 | 14.81 |
| Solyc07g043310.2.1 | Tomato | nucleus | 71.03 | 14.76 |
| KRH29085 | Soybean | cytosol | 72.9 | 14.72 |
| Zm00001d043951_P001 | Maize | cytosol | 25.23 | 12.33 |
| Zm00001d029083_P001 | Maize | extracellular | 31.78 | 7.52 |
| Zm00001d038460_P007 | Maize | plasma membrane | 28.04 | 6.4 |
| Zm00001d027861_P001 | Maize | mitochondrion | 27.1 | 6.07 |
| Zm00001d038547_P001 | Maize | plastid | 26.17 | 5.91 |
| Zm00001d038453_P003 | Maize | mitochondrion | 28.04 | 5.89 |
| Zm00001d035443_P001 | Maize | plastid | 27.1 | 5.86 |
| Zm00001d033228_P002 | Maize | mitochondrion | 25.23 | 5.53 |
| CDY10621 | Canola | extracellular, plastid | 9.35 | 4.24 |
| Zm00001d015444_P003 | Maize | mitochondrion | 7.48 | 3.77 |
| Bra031334.1-P | Field mustard | cytosol | 3.74 | 1.9 |
| PGSC0003DMT400062385 | Potato | cytosol, peroxisome, plastid | 4.67 | 1.63 |
| Zm00001d015445_P008 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d037507_P015 | Maize | cytosol, nucleus, peroxisome | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d019161_P001 | EnsemblPlants:Zm00001d019161_T001 | EnsemblPlantsGene:Zm00001d019161 | Gene3D:3.90.1150.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008483 | GO:GO:0016740 | GO:GO:0030170 | InterPro:Aminotrans_3 | InterPro:IPR015422 |
| InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | PANTHER:PTHR42684 | PANTHER:PTHR42684:SF2 | PFAM:PF00202 | ProteinID:ONM52378.1 |
| SUPFAM:SSF53383 | UniParc:UPI000842485B | UniProt:A0A1D6HVX1 | MapMan:35.1 | : | : |
Description
Gamma-aminobutyrate transaminase POP2 mitochondrial
Coordinates
chr7:-:19609892..19610678
Molecular Weight (calculated)
11885.0 Da
IEP (calculated)
4.987
GRAVY (calculated)
-0.200
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGSYVYDIN GNKYLDSLAG LWCTALGGSE PRLVKAATEQ LNKLPFYHSF WNRTTKPSLD LAQEILSMFT AREMGKVFFT NSGSEANDSQ VSLFYSPSVP
101: SMITESV
101: SMITESV
001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK
Arabidopsis Description
POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.