Factsheet for VIT_03s0017g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24110	Soybean	mitochondrion	78.56	80.7
Solyc07g043310.2.1	Tomato	nucleus	77.23	79.03
PGSC0003DMT400030683	Potato	mitochondrion	77.23	79.03
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	73.62	78.7
PGSC0003DMT400064961	Potato	cytosol	68.31	78.6
PGSC0003DMT400062372	Potato	plastid	76.66	78.29
Solyc12g006450.1.1	Tomato	plastid	76.66	78.29
GSMUA_Achr5P00340_001	Banana	mitochondrion	74.95	78.22
Solyc08g014610.2.1	Tomato	cytosol	67.74	77.95
Solyc12g006470.1.1	Tomato	extracellular, nucleus	67.74	77.95
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	44.78	77.12
KRH29085	Soybean	cytosol	77.04	76.6
Os04t0614600-01	Rice	mitochondrion	74.57	76.16
EES11419	Sorghum	mitochondrion	73.43	75.73
TraesCS7D01G341900.2	Wheat	mitochondrion	72.87	75.59
Os08t0205900-01	Rice	mitochondrion	73.06	75.49
EES14702	Sorghum	mitochondrion	72.87	75.44
TraesCS7B01G246800.1	Wheat	mitochondrion	72.49	75.2
TraesCS2B01G440400.1	Wheat	golgi	72.49	74.76
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	21.82	74.68
Zm00001d026293_P001	Maize	mitochondrion	72.68	74.51
TraesCS2A01G421400.1	Wheat	mitochondrion	72.11	74.36
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	72.49	74.32
HORVU2Hr1G098880.1	Barley	mitochondrion	71.92	74.17
TraesCS2D01G418400.2	Wheat	mitochondrion	71.73	73.97
Zm00001d002326_P003	Maize	mitochondrion	72.68	73.94
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	14.99	73.83
Zm00001d015445_P008	Maize	cytosol	19.73	72.73
TraesCS7A01G334200.1	Wheat	mitochondrion	71.16	72.67
Os04t0614500-01	Rice	plastid	67.74	71.83
Os02t0112900-00	Rice	cytosol	64.14	69.98
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	63.57	69.21
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	72.11	67.74
TraesCS7A01G373400.1	Wheat	plastid	59.77	67.02
Zm00001d015444_P003	Maize	mitochondrion	26.38	65.57
VIT_09s0002g08670.t01	Wine grape	plastid	22.96	26.13
VIT_07s0031g01330.t01	Wine grape	mitochondrion	22.2	24.79
VIT_19s0027g01790.t01	Wine grape	plastid	21.63	24.41
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	21.44	23.69
VIT_10s0003g03870.t01	Wine grape	mitochondrion	20.87	23.61
VIT_06s0004g07660.t01	Wine grape	mitochondrion	21.06	23.22
VIT_17s0000g00900.t01	Wine grape	plastid	18.6	20.72

Protein Annotations

EntrezGene:100248495	wikigene:100248495	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	InterPro:Aminotrans_3
ProteinID:CCB58036	ProteinID:CCB58036.1	UniProt:F6HTM6	EMBL:FN596248	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422
EntrezGene:LOC100248495	wikigene:LOC100248495	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR42684	PANTHER:PTHR42684:SF5
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGR:TC58074	UniParc:UPI0002109169
ArrayExpress:VIT_03s0017g01760	EnsemblPlantsGene:VIT_03s0017g01760	EnsemblPlants:VIT_03s0017g01760.t01	RefSeq:XP_002268803	RefSeq:XP_002268803.1	:

Description

No Description!

Coordinates

chr3:-:17918917..17928021

Molecular Weight (calculated)

58339.2 Da

IEP (calculated)

8.260

GRAVY (calculated)

-0.134

Length

527 amino acids

Sequence
(BLAST)

001: MIFRNLVRST LRNTQAVSYK NHVAAARSLQ EHLVRAPVLA RWNSTEASMQ REDAETELKN AKEFKGHDML APFTAGWQAS DTNPLVIEKS KGAYVWDING
101: KKYLDSLAGL WCTALGGSEP RLVAAAIAQL NTLPFYHSFW NRTTKPSLDL AKELLNTFTA TKMGKAFFTN SGSEANDTQV KLVWYYNNAL GRPNKKKFIA
201: REKSYHGSTL ISASLSGLPA LHQKFDLPAP FVLHTDCPHY WRYHLPGESE EEFSTRLANN LENLILKEGP ETIAAFIAEP VMGAGGVIPP PATYFDKIQP
301: ILKKYDILFI ADEVICAFGR LGTMFGCDKY GMKPDLVSMA KALSSAYMPI GAVLVSPEIS DVIDSQSNKL GVFSHGFTYS GHPVSCAVAL EALKIYKERN
401: IAEVVQRISP KFQNGLKAFS DSPIIGEIRG TGLILGTEFT DNKSPNDVFP PEWGKFHLSF AFIFCIGAYF GAQCQKHGML VRVAGDSIMM SPPFIITPEE
501: VDELISIYGK ALKATEERVK ELKSLQK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.