Factsheet for VIT_08s0058g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

plastid 1
mitochondrion 6
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0475400-02	Rice	peroxisome	68.55	83.63
GSMUA_Achr5P08560_001	Banana	peroxisome	76.31	83.49
CDY61533	Canola	peroxisome	31.87	81.28
VIT_06s0004g07660.t01	Wine grape	mitochondrion	80.08	79.92
GSMUA_Achr8P17090_001	Banana	peroxisome	74.0	78.97
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	78.62	78.45
Solyc10g076250.1.1	Tomato	mitochondrion	77.99	77.82
EES19688	Sorghum	mitochondrion	77.57	77.24
Zm00001d038460_P007	Maize	plasma membrane	75.89	77.19
KRH76075	Soybean	mitochondrion	76.73	77.05
EER94889	Sorghum	mitochondrion	74.42	76.34
GSMUA_Achr6P32610_001	Banana	mitochondrion	76.1	76.26
TraesCS4D01G170300.1	Wheat	mitochondrion	73.38	76.25
KRH65497	Soybean	mitochondrion	75.89	76.21
TraesCS1B01G308900.1	Wheat	mitochondrion	76.1	76.1
TraesCS4A01G137000.1	Wheat	mitochondrion	73.17	76.03
TraesCS4B01G167100.1	Wheat	mitochondrion	73.17	76.03
TraesCS1D01G292100.1	Wheat	mitochondrion	75.89	75.89
TraesCS1A01G299100.1	Wheat	mitochondrion	75.89	75.89
CDY14465	Canola	cytosol	67.51	75.76
CDY54458	Canola	mitochondrion	74.63	75.11
Bra005111.1-P	Field mustard	mitochondrion	74.21	74.68
AT3G08860.1	Thale cress	mitochondrion	75.26	74.64
Bra017119.1-P	Field mustard	mitochondrion	74.84	74.53
Bra000060.1-P	Field mustard	mitochondrion	74.21	74.37
CDY54421	Canola	mitochondrion	74.42	73.8
CDY00650	Canola	mitochondrion	72.54	73.62
CDX73944	Canola	mitochondrion	72.54	73.62
Os03t0338000-01	Rice	peroxisome	74.63	73.55
CDY18386	Canola	mitochondrion	35.85	73.39
CDY00651	Canola	mitochondrion	72.12	73.19
KRH00394	Soybean	mitochondrion	73.79	73.03
Bra001341.1-P	Field mustard	mitochondrion, peroxisome	70.02	72.93
CDY66720	Canola	mitochondrion	74.84	72.56
AT2G38400.2	Thale cress	mitochondrion	74.84	72.41
Zm00001d038453_P003	Maize	mitochondrion	77.15	72.3
CDY61531	Canola	mitochondrion	31.66	71.9
Zm00001d029083_P001	Maize	extracellular	68.13	71.9
HORVU1Hr1G070220.2	Barley	mitochondrion	74.0	71.46
Zm00001d043951_P001	Maize	cytosol	29.56	64.38
GSMUA_Achr1P17230_001	Banana	peroxisome	29.98	63.27
VIT_07s0031g01330.t01	Wine grape	mitochondrion	61.64	62.29
CDY71561	Canola	mitochondrion	28.93	62.16
VIT_19s0027g01790.t01	Wine grape	plastid	28.3	28.91
VIT_09s0002g08670.t01	Wine grape	plastid	27.46	28.29
VIT_10s0003g03870.t01	Wine grape	mitochondrion	24.95	25.54
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	24.74	23.94
VIT_17s0000g00900.t01	Wine grape	plastid	22.22	22.41
VIT_03s0017g01760.t01	Wine grape	mitochondrion	23.69	21.44

Protein Annotations

EntrezGene:100251671	wikigene:100251671	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	InterPro:Aminotrans_3
ProteinID:CCB44790	ProteinID:CCB44790.1	UniProt:F6GXY9	EMBL:FN594967	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008453	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	GO:GO:0042802
InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100251671	wikigene:LOC100251671	PFAM:PF00202	PIRSF:PIRSF000521
ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF77	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	TIGR:TC60168	UniParc:UPI00015CC393	ArrayExpress:VIT_08s0058g00930	EnsemblPlantsGene:VIT_08s0058g00930	EnsemblPlants:VIT_08s0058g00930.t01
unigene:Vvi.9014	RefSeq:XP_002267787	RefSeq:XP_002267787.1	:	:	:

Description

No Description!

Coordinates

chr8:-:10247220..10250419

Molecular Weight (calculated)

52664.6 Da

IEP (calculated)

7.615

GRAVY (calculated)

-0.094

Length

477 amino acids

Sequence
(BLAST)

001: MQRFVVGRVS QEKHFLQWRR NLSQLVQNKA PLQENDLLLP KMPPFDYSPP PYNGPSAADI LQKRKQYLSP SIFCFYNQPV NIVDGKMQYL FDEKGRRYLD
101: AFGGIATVNC GHCHPDVVDV IVKQINRLQH STVLYLNHAI ADFAEALASK MPGDLKVVFF TNSGTEANEL AMMMARLYTG CNDIISLRNA YHGNAAGTMG
201: ATAQRVWKFN VVQTGVHHAL NPDPYRGMFG SDGEKYARDV QDLIDFGTSG HVAGFISEAI QGVGGIVELA PGYLPAVYSS VKKAGGLFIA DEVQSGFART
301: GSHFWGFESQ GVVPDIVTMA KGIGNGIPLG AVVTTPEIAE VLTRRNYFNT FGGNPVCTTA GHAVLKVIEK EKLQENAYVV GSYLKERLLS LKDKYEIIGD
401: VRGRGLMLGV EFVTDRKLKT PANVEILHIM DQMKEMGVLV GKGGFYGNVF RITPPLCFTK EDADFFVDVM DYAMSKM

Best Arabidopsis Sequence Match ( AT2G38400.1 )
(BLAST)

001: MQRFAAKRSV QNISVSLWRR CISSTSQAAT ASVKDSDEFQ ARLPPFAYTP PPYTGPSADV ILSKRKEFLS PSMFCLYRKP LNIVDGKMQY LFDESGRRYL
101: DAFAGIAVVN CGHCHPDVVE PVINQIKRLQ HPTVLYLNHA IADFSEALAS KLPGDLKVVF FTNSGTEANE LALMMAKLYT GCQDIVAVRN GYHGNAAATM
201: GATGQSMWKF NVVQNSVHHA LNPDPYRGVF GSDGEKYAKD LQDLIQYGTT GHIAGFICEA IQGVGGIVEL APGYLSAAYD TVKKAGGLFI ADEVQSGFAR
301: TGNFWGFEAH NVVPDIVTMA KGIGNGFPLG AVVTTPEIAG VLTRRSYFNT FGGNSVSTTA GLAVLNVIEK EKLQENAAMV GSYLKEKLTQ LKEKHEIIGD
401: VRGRGLMLGV ELVSDRKLKT PATAETLHIM DQMKELGVLI GKGGYFGNVF RITPPLCFTK DDADFLVEAM DYSMSKM

Arabidopsis Description

AGT3Alanine:glyoxylate aminotransferase 3 [Source:UniProtKB/TrEMBL;Acc:F4ISY3]
SUBAcon: [mitochondrion,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.