Factsheet for AT3G08860.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73944	Canola	mitochondrion	89.81	91.91
CDY00650	Canola	mitochondrion	89.4	91.49
CDY00651	Canola	mitochondrion	88.98	91.06
Bra001341.1-P	Field mustard	mitochondrion, peroxisome	86.07	90.39
CDY71561	Canola	mitochondrion	40.54	87.84
GSMUA_Achr5P08560_001	Banana	peroxisome	69.65	76.83
Os05t0475400-02	Rice	peroxisome	62.37	76.73
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	74.64	75.26
TraesCS4B01G167100.1	Wheat	mitochondrion	70.06	73.42
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	72.77	73.22
TraesCS4D01G170300.1	Wheat	mitochondrion	69.65	72.98
TraesCS4A01G137000.1	Wheat	mitochondrion	69.44	72.77
Solyc10g076250.1.1	Tomato	mitochondrion	72.14	72.59
EES19688	Sorghum	mitochondrion	71.73	72.03
VIT_06s0004g07660.t01	Wine grape	mitochondrion	71.52	71.97
Zm00001d038460_P007	Maize	plasma membrane	70.06	71.86
EER94889	Sorghum	mitochondrion	69.23	71.61
TraesCS1D01G292100.1	Wheat	mitochondrion	70.89	71.49
TraesCS1B01G308900.1	Wheat	mitochondrion	70.89	71.49
TraesCS1A01G299100.1	Wheat	mitochondrion	70.69	71.28
KRH76075	Soybean	mitochondrion	70.27	71.16
GSMUA_Achr8P17090_001	Banana	peroxisome	66.11	71.14
GSMUA_Achr6P32610_001	Banana	mitochondrion	70.27	71.01
KRH65497	Soybean	mitochondrion	70.06	70.95
KRH00394	Soybean	mitochondrion	70.89	70.75
Os03t0338000-01	Rice	peroxisome	70.89	70.45
Zm00001d029083_P001	Maize	extracellular	64.03	68.14
HORVU1Hr1G070220.2	Barley	mitochondrion	69.23	67.41
Zm00001d038453_P003	Maize	mitochondrion	71.1	67.19
AT2G38400.2	Thale cress	mitochondrion	68.19	66.53
GSMUA_Achr1P17230_001	Banana	peroxisome	29.11	61.95
AT4G39660.1	Thale cress	mitochondrion	59.25	59.87
Zm00001d043951_P001	Maize	cytosol	27.03	59.36
AT1G80600.1	Thale cress	plastid	24.12	25.38
AT5G46180.1	Thale cress	mitochondrion	24.53	24.84
AT3G22200.2	Thale cress	mitochondrion	22.04	20.66
AT3G48730.1	Thale cress	plastid	20.17	20.55
AT5G63570.1	Thale cress	plastid	19.54	19.83

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	EntrezGene:820034	ProteinID:AAF07846.1	ProteinID:AEE74688.1
EMBL:AK226401	ArrayExpress:AT3G08860	EnsemblPlantsGene:AT3G08860	RefSeq:AT3G08860	TAIR:AT3G08860	RefSeq:AT3G08860-TAIR-G
EnsemblPlants:AT3G08860.1	TAIR:AT3G08860.1	EMBL:AY099816	InterPro:Aminotrans_3	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0008453	GO:GO:0008483
GO:GO:0009605	GO:GO:0009853	GO:GO:0009987	GO:GO:0009991	GO:GO:0016740	GO:GO:0030170
GO:GO:0042802	GO:GO:0043562	InterPro:IPR015421	InterPro:IPR015422	RefSeq:NP_187498.1	PFAM:PF00202
PIRSF:PIRSF000521	PO:PO:0000013	PO:PO:0000084	PO:PO:0000293	PO:PO:0007115	PO:PO:0007123
PO:PO:0007616	PO:PO:0009005	PO:PO:0009015	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009046	PO:PO:0009047	PO:PO:0020030	PO:PO:0020100	PO:PO:0025022
PO:PO:0025281	ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF77	Symbol:PYD4	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q0WWF1	UniProt:Q9SR86	SUPFAM:SSF53383	UniParc:UPI00000A98B3
SEG:seg	:	:	:	:	:

Description

PYD4Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SR86]

Coordinates

chr3:-:2696199..2699420

Molecular Weight (calculated)

52464.2 Da

IEP (calculated)

8.157

GRAVY (calculated)

-0.096

Length

481 amino acids

Sequence
(BLAST)

001: MRKLTAVNSL LKRNNYLLPR HGSSQTAAQR TSSVRETETE TKLPKMPPFN YSPPPYDGPS TAEIIAKRRE FLSPALFHFY NTPLNIVEAK MQYVFDENGR
101: RYLDAFGGIA TVSCGHCHPE VVNSVVKQLK LINHSTILYL NHTISDFAEA LVSTLPGDLK VVFFTNSGTE ANELAMMMAR LYTGCNDIVS LRNSYHGNAA
201: ATMGATAQSN WKFNVVQSGV HHAINPDPYR GIFGSDGEKY ASDVHDLIQF GTSGQVAGFI GESIQGVGGI VELAPGYLPA AYDIVRKAGG VCIADEVQSG
301: FARTGTHFWG FQSHGVIPDI VTMAKGIGNG IPLGAVVTTP EIAGVLSRRS YFNTFGGNPM CTAAGHAVLR VLHEEKLQEN ANLVGSHLKR RLTLLKNKYE
401: LIGDVRGRGL MLGVEFVKDR DLKTPAKAET LHLMDQMKEM GVLVGKGGFY GNVFRITPPL CFTLSDADFL VDVMDHAMSK M

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.