Factsheet for VIT_06s0004g07660.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08560_001	Banana	peroxisome	76.78	84.17
Os05t0475400-02	Rice	peroxisome	67.15	82.1
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	79.92	80.08
GSMUA_Achr8P17090_001	Banana	peroxisome	73.43	78.52
CDY61533	Canola	peroxisome	30.33	77.54
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	77.41	77.41
KRH76075	Soybean	mitochondrion	76.36	76.84
Solyc10g076250.1.1	Tomato	mitochondrion	76.15	76.15
KRH65497	Soybean	mitochondrion	75.52	76.0
EER94889	Sorghum	mitochondrion	73.22	75.27
TraesCS4D01G170300.1	Wheat	mitochondrion	72.18	75.16
TraesCS1B01G308900.1	Wheat	mitochondrion	74.9	75.05
TraesCS1A01G299100.1	Wheat	mitochondrion	74.9	75.05
TraesCS1D01G292100.1	Wheat	mitochondrion	74.9	75.05
EES19688	Sorghum	mitochondrion	75.1	74.95
TraesCS4B01G167100.1	Wheat	mitochondrion	71.97	74.95
TraesCS4A01G137000.1	Wheat	mitochondrion	71.97	74.95
Zm00001d038460_P007	Maize	plasma membrane	72.59	73.99
GSMUA_Achr6P32610_001	Banana	mitochondrion	73.43	73.74
KRH00394	Soybean	mitochondrion	74.06	73.44
CDY18386	Canola	mitochondrion	35.77	73.39
Os03t0338000-01	Rice	peroxisome	74.06	73.14
Bra017119.1-P	Field mustard	mitochondrion	72.8	72.65
CDY54458	Canola	mitochondrion	71.97	72.57
CDY14465	Canola	cytosol	64.44	72.47
CDY54421	Canola	mitochondrion	72.59	72.14
Bra005111.1-P	Field mustard	mitochondrion	71.34	71.94
Bra000060.1-P	Field mustard	mitochondrion	71.55	71.85
HORVU1Hr1G070220.2	Barley	mitochondrion	74.06	71.66
AT3G08860.1	Thale cress	mitochondrion	71.97	71.52
Zm00001d029083_P001	Maize	extracellular	66.95	70.8
AT2G38400.2	Thale cress	mitochondrion	73.01	70.79
CDY00650	Canola	mitochondrion	69.04	70.21
CDX73944	Canola	mitochondrion	69.04	70.21
CDY00651	Canola	mitochondrion	68.83	70.0
CDY66720	Canola	mitochondrion	71.97	69.92
Bra001341.1-P	Field mustard	mitochondrion, peroxisome	66.95	69.87
Zm00001d038453_P003	Maize	mitochondrion	74.06	69.55
CDY61531	Canola	mitochondrion	29.5	67.14
GSMUA_Achr1P17230_001	Banana	peroxisome	30.13	63.72
Zm00001d043951_P001	Maize	cytosol	28.87	63.01
VIT_07s0031g01330.t01	Wine grape	mitochondrion	60.67	61.44
CDY71561	Canola	mitochondrion	28.24	60.81
VIT_19s0027g01790.t01	Wine grape	plastid	28.24	28.91
VIT_09s0002g08670.t01	Wine grape	plastid	27.2	28.08
VIT_10s0003g03870.t01	Wine grape	mitochondrion	26.15	26.82
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	24.06	23.33
VIT_17s0000g00900.t01	Wine grape	plastid	21.34	21.56
VIT_03s0017g01760.t01	Wine grape	mitochondrion	23.22	21.06

Protein Annotations

EntrezGene:100258727	wikigene:100258727	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	InterPro:Aminotrans_3
ProteinID:CCB43419	ProteinID:CCB43419.1	UniProt:F6GUG5	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008453	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	GO:GO:0042802
InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100258727	wikigene:LOC100258727	PFAM:PF00202	PIRSF:PIRSF000521
ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF77	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	TIGR:TC63178	UniParc:UPI0001983750	ArrayExpress:VIT_06s0004g07660	EnsemblPlantsGene:VIT_06s0004g07660	EnsemblPlants:VIT_06s0004g07660.t01
unigene:Vvi.3270	RefSeq:XP_002270785	RefSeq:XP_002270785.1	:	:	:

Description

No Description!

Coordinates

chr6:-:8450528..8454890

Molecular Weight (calculated)

52046.8 Da

IEP (calculated)

7.183

GRAVY (calculated)

-0.018

Length

478 amino acids

Sequence
(BLAST)

001: MQRISKISGA LSGSYLQLCR RSLSRLAQTQ PALVDDDAVL PKMPPFDYSP PPYTGPSAAE ILKKRQEYLS PSLFHFYSNP LNLVDGKMQY LFDENGRRYL
101: DAFGGIATVC CGHCHPDVVE AIVSQTQRLQ HSTVLYLNHA IAEFAEALAS KMPGDLKVVF FTNSGTEANE LAMMIARLYT GFHDIISLRN AYHGNAAATM
201: SATAQCNYKF NVVQTGVHHA LNPDQYRGVF GSDGLKYAKD VQDLIDYGTC GNVAGFLAEA IQGVGGILEL APGYLAAVYG TIKKAGGLCI ADEVQSGFAR
301: TGSHFWGFEA HGVVPDIVTM AKGIGNGVPI GAVVTTPEIA KVLTYRTYFN TFGGNPVSTA SGLAVLRVIE KEKLQENAHV VGSYLKDRLT SLKEKHEIIG
401: DVRGRGLMLG VELVTDRQLK TPAKVETLHV MDKMKEMGVL IGKGGFYGNV FRITPPLCFT KEDADFLVDV MDYTMSRM

Best Arabidopsis Sequence Match ( AT3G08860.1 )
(BLAST)

001: MRKLTAVNSL LKRNNYLLPR HGSSQTAAQR TSSVRETETE TKLPKMPPFN YSPPPYDGPS TAEIIAKRRE FLSPALFHFY NTPLNIVEAK MQYVFDENGR
101: RYLDAFGGIA TVSCGHCHPE VVNSVVKQLK LINHSTILYL NHTISDFAEA LVSTLPGDLK VVFFTNSGTE ANELAMMMAR LYTGCNDIVS LRNSYHGNAA
201: ATMGATAQSN WKFNVVQSGV HHAINPDPYR GIFGSDGEKY ASDVHDLIQF GTSGQVAGFI GESIQGVGGI VELAPGYLPA AYDIVRKAGG VCIADEVQSG
301: FARTGTHFWG FQSHGVIPDI VTMAKGIGNG IPLGAVVTTP EIAGVLSRRS YFNTFGGNPM CTAAGHAVLR VLHEEKLQEN ANLVGSHLKR RLTLLKNKYE
401: LIGDVRGRGL MLGVEFVKDR DLKTPAKAET LHLMDQMKEM GVLVGKGGFY GNVFRITPPL CFTLSDADFL VDVMDHAMSK M

Arabidopsis Description

PYD4Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SR86]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.