CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017119.1-P	Field mustard	mitochondrion	95.84	96.24
CDY18386	Canola	mitochondrion	46.15	95.28
CDY61533	Canola	peroxisome	35.76	91.98
CDY54458	Canola	mitochondrion	87.32	88.61
CDY14465	Canola	cytosol	76.92	87.06
CDY66720	Canola	mitochondrion	87.73	85.77
AT2G38400.2	Thale cress	mitochondrion	85.24	83.16
CDY61531	Canola	mitochondrion	36.17	82.86
GSMUA_Achr5P08560_001	Banana	peroxisome	69.02	76.15
Os05t0475400-02	Rice	peroxisome	60.91	74.94
VIT_08s0058g00930.t01	Wine grape	mitochondrion, peroxisome	73.8	74.42
VIT_06s0004g07660.t01	Wine grape	mitochondrion	72.14	72.59
GSMUA_Achr8P17090_001	Banana	peroxisome	66.53	71.59
KRH76075	Soybean	mitochondrion	70.06	70.95
GSMUA_Achr6P32610_001	Banana	mitochondrion	69.65	70.38
KRH65497	Soybean	mitochondrion	69.23	70.11
TraesCS1D01G292100.1	Wheat	mitochondrion	69.44	70.02
EES19688	Sorghum	mitochondrion	69.65	69.94
Solyc10g076250.1.1	Tomato	mitochondrion	69.44	69.87
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	69.44	69.87
TraesCS1B01G308900.1	Wheat	mitochondrion	69.02	69.6
TraesCS1A01G299100.1	Wheat	mitochondrion	68.81	69.39
CDY00650	Canola	mitochondrion	67.78	69.36
CDY00651	Canola	mitochondrion	67.57	69.15
CDX73944	Canola	mitochondrion	67.57	69.15
KRH00394	Soybean	mitochondrion	68.81	68.67
EER94889	Sorghum	mitochondrion	66.32	68.6
Zm00001d038460_P007	Maize	plasma membrane	66.74	68.44
TraesCS4B01G167100.1	Wheat	mitochondrion	64.86	67.97
TraesCS4A01G137000.1	Wheat	mitochondrion	64.66	67.76
TraesCS4D01G170300.1	Wheat	mitochondrion	64.45	67.54
HORVU1Hr1G070220.2	Barley	mitochondrion	67.78	65.99
Os03t0338000-01	Rice	peroxisome	66.11	65.7
Zm00001d038453_P003	Maize	mitochondrion	68.4	64.64
Zm00001d029083_P001	Maize	extracellular	60.5	64.38
CDX90347	Canola	mitochondrion	60.91	61.55
CDY63451	Canola	mitochondrion	60.71	61.34
CDY42643	Canola	mitochondrion	60.71	61.34
CDY41995	Canola	mitochondrion	59.88	60.5
CDY71561	Canola	mitochondrion	27.44	59.46
GSMUA_Achr1P17230_001	Banana	peroxisome	27.23	57.96
Zm00001d043951_P001	Maize	cytosol	25.78	56.62
CDY67620	Canola	mitochondrion, plastid	25.78	27.68
CDX87325	Canola	mitochondrion	25.78	27.49
CDY37615	Canola	mitochondrion	25.57	27.46
CDY39963	Canola	mitochondrion	25.57	27.27
CDX77642	Canola	mitochondrion	23.28	26.29
CDY33459	Canola	mitochondrion	22.66	25.53
CDY35151	Canola	mitochondrion	19.33	24.41
CDY68670	Canola	cytosol	21.0	22.65
CDY58748	Canola	mitochondrion	22.66	21.89
CDY37389	Canola	mitochondrion	22.66	21.8
CDY10619	Canola	mitochondrion	22.45	21.6
CDY39506	Canola	mitochondrion	22.66	21.54
CDY03236	Canola	cytosol	17.05	21.3
CDY10622	Canola	golgi	20.79	21.19
CDY41519	Canola	plastid	19.96	20.3
CDY62883	Canola	plastid	19.96	20.3
CDX81186	Canola	plastid	19.75	20.08
CDY16715	Canola	plastid	19.54	19.87
CDY10621	Canola	extracellular, plastid	9.15	18.64

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	GO:A0A078IWQ8	UniProt:A0A078IWQ8	InterPro:Aminotrans_3
EnsemblPlants:CDY54421	ProteinID:CDY54421	ProteinID:CDY54421.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00014088001	InterPro:IPR015421	InterPro:IPR015422
PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF77	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0004EB0794	SEG:seg	:

Description

BnaC04g56620DBnaC04g56620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWQ8]

Coordinates

chrLK033318:+:57850..60106

Molecular Weight (calculated)

51959.5 Da

IEP (calculated)

7.351

GRAVY (calculated)

-0.011

Length

481 amino acids

Sequence
(BLAST)

001: MQRLTAKRTV HNVSLSLSRR CISFSSSTSQ TATAAPVDEF LGKLPPFGYT PPPYTGPSAD AIINTRKEFL SPSNSMFCLY KNPLNIVDGR MQYLFDESGR
101: RYLDAFAGIA VVNCGHCHPS VVEPVINQIK KLQHPTVMYL NHAIAELSEA LASKLPGDLK VVFFTNSGTE ANELALMMAK LYTGCQDIVS VRNGYHGNAA
201: GTMGATAHST WKFNNVVQTG THHALNPDPY RGVFGSDGEK YARDVQDLIQ YGTSGHIAGF ICEVIQGVGG IVELAPGYLS AAYDIVKKAG GLFIADEVQS
301: GFARTGDFWG FEAHNVVPDI VTMAKGIGNG FPLGAVVTTP EIAGVLTRRC YFNTFGGNAV AATAGLAVLN VIEKDKLQVN ASMVGSYLKG RLSQLKEKHE
401: IIGDVRGRGL MLGVELVSDR NLKTPATAET LHIMDQMKEL GVLVGKGGYF GNVFRITPPL CFTKDDADYL VEAMDYSMSR M

Best Arabidopsis Sequence Match ( AT2G38400.1 )
(BLAST)

001: MQRFAAKRSV QNISVSLWRR CISSTSQAAT ASVKDSDEFQ ARLPPFAYTP PPYTGPSADV ILSKRKEFLS PSMFCLYRKP LNIVDGKMQY LFDESGRRYL
101: DAFAGIAVVN CGHCHPDVVE PVINQIKRLQ HPTVLYLNHA IADFSEALAS KLPGDLKVVF FTNSGTEANE LALMMAKLYT GCQDIVAVRN GYHGNAAATM
201: GATGQSMWKF NVVQNSVHHA LNPDPYRGVF GSDGEKYAKD LQDLIQYGTT GHIAGFICEA IQGVGGIVEL APGYLSAAYD TVKKAGGLFI ADEVQSGFAR
301: TGNFWGFEAH NVVPDIVTMA KGIGNGFPLG AVVTTPEIAG VLTRRSYFNT FGGNSVSTTA GLAVLNVIEK EKLQENAAMV GSYLKEKLTQ LKEKHEIIGD
401: VRGRGLMLGV ELVSDRKLKT PATAETLHIM DQMKELGVLI GKGGYFGNVF RITPPLCFTK DDADFLVEAM DYSMSKM

Arabidopsis Description

AGT3Alanine:glyoxylate aminotransferase 3 [Source:UniProtKB/TrEMBL;Acc:F4ISY3]
SUBAcon: [mitochondrion,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.