CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	CDY03088	AT2G01950.1	19000166
AT5G63570.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41519	Canola	plastid	99.58	99.58
CDX81186	Canola	plastid	97.46	97.46
CDY16715	Canola	plastid	97.25	97.25
AT5G63570.1	Thale cress	plastid	97.25	97.05
PGSC0003DMT400082447	Potato	cytosol	83.51	82.12
Solyc04g009200.2.1	Tomato	plastid	83.3	81.74
VIT_17s0000g00900.t01	Wine grape	plastid	81.61	81.61
KRH51376	Soybean	plastid	77.59	78.76
KXG22248	Sorghum	plastid	78.22	78.22
KRH60678	Soybean	nucleus	77.59	78.09
Zm00001d038547_P001	Maize	plastid	77.8	77.64
TraesCS7D01G261800.1	Wheat	plastid	77.38	77.54
TraesCS7A01G260800.2	Wheat	plastid	77.38	77.54
TraesCS7B01G158800.1	Wheat	plastid	76.32	76.48
GSMUA_Achr6P07940_001	Banana	plastid	76.32	76.16
Os08t0532200-01	Rice	plastid	76.96	76.15
TraesCS7D01G262000.1	Wheat	mitochondrion	51.8	73.8
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	76.74	70.76
HORVU7Hr1G054360.1	Barley	plastid	30.44	68.25
CDX87325	Canola	mitochondrion	21.99	23.06
CDY61533	Canola	peroxisome	9.09	22.99
CDY39963	Canola	mitochondrion	21.56	22.62
CDY37615	Canola	mitochondrion	21.14	22.32
CDY67620	Canola	mitochondrion, plastid	21.14	22.32
CDY33459	Canola	mitochondrion	19.66	21.78
CDX77642	Canola	mitochondrion	19.24	21.36
CDY14465	Canola	cytosol	19.03	21.18
CDY35151	Canola	mitochondrion	16.91	21.0
CDY41995	Canola	mitochondrion	20.72	20.59
CDY18386	Canola	mitochondrion	9.94	20.17
CDX90347	Canola	mitochondrion	20.3	20.17
CDY63451	Canola	mitochondrion	20.3	20.17
CDY42643	Canola	mitochondrion	20.3	20.17
CDY54458	Canola	mitochondrion	20.08	20.04
CDX73944	Canola	mitochondrion	19.87	20.0
CDY54421	Canola	mitochondrion	20.3	19.96
CDY66720	Canola	mitochondrion	20.72	19.92
CDY00651	Canola	mitochondrion	19.45	19.57
CDY00650	Canola	mitochondrion	19.45	19.57
CDY39506	Canola	mitochondrion	20.93	19.57
CDY58748	Canola	mitochondrion	20.51	19.48
CDY10622	Canola	golgi	18.39	18.43
CDY37389	Canola	mitochondrion	19.24	18.2
CDY10619	Canola	mitochondrion	19.24	18.2
CDY61531	Canola	mitochondrion	7.82	17.62
CDY03236	Canola	cytosol	14.16	17.4
CDY68670	Canola	cytosol	16.28	17.26
CDY71561	Canola	mitochondrion	7.61	16.22
CDY10621	Canola	extracellular, plastid	7.82	15.68

Protein Annotations

KEGG:00860+5.4.3.8	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4	GO:A0A078JB53
UniProt:A0A078JB53	InterPro:Aminotrans_3	EnsemblPlants:CDY62883	ProteinID:CDY62883	ProteinID:CDY62883.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0033014	GO:GO:0042286	EnsemblPlantsGene:GSBRNA2T00037717001
InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00375	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR43713
PANTHER:PTHR43713:SF2	MetaCyc:PWY-5188	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
TIGRFAMs:TIGR00713	UniPathway:UPA00251	UniParc:UPI0004EE6CCE	SEG:seg	:	:

Description

BnaC03g74650DBnaC03g74650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB53]

Coordinates

chrLK034213:-:388..2495

Molecular Weight (calculated)

50292.5 Da

IEP (calculated)

6.869

GRAVY (calculated)

-0.004

Length

473 amino acids

Sequence
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPST RCSIKMSVSV DEKKKSFTLQ KSEEAFNAAK NLMPGGVNSP VRAFKSVGGQ PVLIDSVKGS KMWDIDGNEY
101: IDYVGSWGPA IIGHADDEVL AALAETMKKG TSFGAPCLLE NVLAEMVISA VPSIEMVRFV NSGTEACMGV LRLARAFTNK EKFIKFEGCY HGHANAFLVK
201: AGSGVATLGL PDSPGVPKAA TSDTLTAPYN DIEAVAKLFE AHKGEISAVI LEPVVGNSGF ITPTPEFING LRQLTKDNGA LLIFDEVMTG FRLAYGGAQE
301: YFGITPDLTT LGKIIGGGLP VGAYGGRRDI MEMVAPAGPM YQAGTLSGNP LAMTAGIHTL KRLKQPGTYE YLDKITKELT NGILEAGKKT GHPMCGGYIS
401: GMFGFFFAEG PVYNFADAKK SDTEKFGRFF RGMLEEGVYF APSQFEAGFT SLAHTPEDIQ FTISAAERVL GRI

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.