Factsheet for TraesCS7B01G158800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63570.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G63570.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G63570.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G261800.1	Wheat	plastid	97.88	97.88
TraesCS7A01G260800.2	Wheat	plastid	97.88	97.88
Os08t0532200-01	Rice	plastid	91.53	90.38
KXG22248	Sorghum	plastid	89.62	89.43
HORVU7Hr1G054380.1	Barley	cytosol, peroxisome, plastid	96.82	89.08
Zm00001d038547_P001	Maize	plastid	89.41	89.03
TraesCS7D01G262000.1	Wheat	mitochondrion	62.08	88.25
HORVU7Hr1G054360.1	Barley	plastid	37.5	83.89
GSMUA_Achr6P07940_001	Banana	plastid	80.3	79.96
KRH51376	Soybean	plastid	76.27	77.25
KRH60678	Soybean	nucleus	76.06	76.38
CDY62883	Canola	plastid	76.48	76.32
CDY41519	Canola	plastid	76.27	76.11
Bra038646.1-P	Field mustard	plastid	76.06	75.9
Bra035836.1-P	Field mustard	plastid	76.06	75.9
VIT_17s0000g00900.t01	Wine grape	plastid	75.85	75.69
AT3G48730.1	Thale cress	plastid	75.64	75.64
CDX81186	Canola	plastid	75.64	75.48
CDY16715	Canola	plastid	75.64	75.48
PGSC0003DMT400082447	Potato	cytosol	76.91	75.47
AT5G63570.1	Thale cress	plastid	75.64	75.32
Solyc04g009200.2.1	Tomato	plastid	76.91	75.31
KRH17479	Soybean	plastid	52.12	59.28
TraesCS1B01G090600.1	Wheat	plastid	23.09	23.7
TraesCS5B01G376900.1	Wheat	mitochondrion	23.09	23.29
TraesCS4B01G167100.1	Wheat	mitochondrion	20.76	21.35
TraesCS1B01G308900.1	Wheat	mitochondrion	21.19	20.96
TraesCS4B01G288100.1	Wheat	mitochondrion	20.76	20.46
TraesCS7B01G246800.1	Wheat	mitochondrion	21.82	20.28
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	19.92	19.42
TraesCS2B01G440400.1	Wheat	golgi	20.97	19.37

Protein Annotations

KEGG:00860+5.4.3.8	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:4pyrrol_synth_GluAld_NH2Trfase	MapMan:7.12.1.4	InterPro:Aminotrans_3
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0033014	GO:GO:0042286
InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00375	PFAM:PF00202	ScanProsite:PS00600	PANTHER:PTHR43713
PANTHER:PTHR43713:SF2	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00713
EnsemblPlantsGene:TraesCS7B01G158800	EnsemblPlants:TraesCS7B01G158800.1	TIGR:cd00610	SEG:seg	:	:

Description

No Description!

Coordinates

chr7B:+:215927020..215929832

Molecular Weight (calculated)

49091.2 Da

IEP (calculated)

6.682

GRAVY (calculated)

0.066

Length

472 amino acids

Sequence
(BLAST)

001: MAGAAAAAAA VASGISVRPV AAPKISRAPR SRSVVRAAVS IGEKAYTVQK SEEIXXXXXE LMPGGVNSPV RAFKSVGGQP IVFDSVKGSH MWDVDGNEYI
101: DYVGSWGPAI IGHADDKVNA ALIETLKKGT SFGAPCALEN VLAQMVISAV PSIEMVRFVN SGTEACMGAL RLVRAFTGRE KILKFEGCYH GHADSFLVKA
201: GSGVATLGLP DSPGVPKGAT VGTLTAPYND AEAVKKLFED NKGEIAAVFL EPVVGNAGFI PPQPAFLNAL REVTKQDGAL LVFDEVMTGF RLAYGGAQEY
301: FGITPDVTTL GKIIGGGLPV GAYGGRKDIM EMVAPAGPMY QAGTLSGNPL AMTAGIHTLK RLMEPGTYEY LDKVTGELVQ GILDAGAKTG HEMCGGHIRG
401: MFGFFFAGGP VHNFDDAKKS DTAKFGRFHR GMLEEGVYLA PSQFEAGFTS LAHTTLDIEK TVEAAEKVLR RI

Best Arabidopsis Sequence Match ( AT5G63570.1 )
(BLAST)

001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI

Arabidopsis Description

GSA1Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42799]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.