Factsheet for PGSC0003DMT400062385

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
nucleus 1
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006470.1.1	Tomato	extracellular, nucleus	97.39	65.07
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	32.03	63.64
Zm00001d015445_P008	Maize	cytosol	29.09	62.24
PGSC0003DMT400064961	Potato	cytosol	86.93	58.08
Zm00001d015444_P003	Maize	mitochondrion	35.95	51.89
Bra031334.1-P	Field mustard	cytosol	35.62	51.66
PGSC0003DMT400062372	Potato	plastid	78.43	46.51
KRH24110	Soybean	mitochondrion	77.45	46.2
CDY10621	Canola	extracellular, plastid	35.62	46.19
PGSC0003DMT400030683	Potato	mitochondrion	76.14	45.24
CDY37389	Canola	mitochondrion	73.86	45.2
CDY10619	Canola	mitochondrion	73.86	45.2
Bra031332.1-P	Field mustard	mitochondrion	73.86	45.2
CDY10622	Canola	golgi	69.61	45.13
VIT_03s0017g01760.t01	Wine grape	mitochondrion	77.12	44.78
CDY58748	Canola	mitochondrion	72.22	44.38
KRH29085	Soybean	cytosol	76.8	44.34
Bra023845.1-P	Field mustard	mitochondrion	72.55	44.31
GSMUA_Achr5P00340_001	Banana	mitochondrion	72.55	43.96
CDY39506	Canola	mitochondrion	72.55	43.87
TraesCS7D01G341900.2	Wheat	mitochondrion	72.22	43.5
Os04t0614500-01	Rice	plastid	70.26	43.26
EES14702	Sorghum	mitochondrion	71.9	43.22
TraesCS7B01G246800.1	Wheat	mitochondrion	71.57	43.11
AT3G22200.2	Thale cress	mitochondrion	72.22	43.08
Os02t0112900-00	Rice	cytosol	67.65	42.86
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	71.9	42.8
Os08t0205900-01	Rice	mitochondrion	70.92	42.55
Os04t0614600-01	Rice	mitochondrion	71.24	42.25
Bra031335.1-P	Field mustard	mitochondrion	69.28	42.23
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	66.34	41.94
HORVU2Hr1G098880.1	Barley	mitochondrion	69.61	41.68
EES11419	Sorghum	mitochondrion	69.28	41.49
TraesCS2A01G421400.1	Wheat	mitochondrion	68.95	41.29
TraesCS2B01G440400.1	Wheat	golgi	68.95	41.29
TraesCS7A01G334200.1	Wheat	mitochondrion	69.61	41.28
TraesCS2D01G418400.2	Wheat	mitochondrion	68.3	40.9
Zm00001d026293_P001	Maize	mitochondrion	68.3	40.66
Zm00001d002326_P003	Maize	mitochondrion	67.32	39.77
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	72.22	39.39
TraesCS7A01G373400.1	Wheat	plastid	59.15	38.51
PGSC0003DMT400076803	Potato	cytosol, extracellular, mitochondrion	21.24	26.1
PGSC0003DMT400058543	Potato	cytosol, plastid	24.84	16.63
PGSC0003DMT400033328	Potato	extracellular	24.18	15.64
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	24.18	15.48
PGSC0003DMT400082447	Potato	cytosol	22.55	14.35
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	1.63	4.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400062385	EnsemblPlantsGene:PGSC0003DMG400024281	Gene3D:3.40.640.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	InterPro:Aminotrans_3	InterPro:IPR015421	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_major	ncoils:Coil	PANTHER:PTHR42684	PANTHER:PTHR42684:SF5	PFAM:PF00202	PGSC:PGSC0003DMG400024281
ScanProsite:PS00600	SUPFAM:SSF53383	UniParc:UPI000294B3F6	UniProt:M1C906	MapMan:4.2.2.1	:

Description

Gamma aminobutyrate transaminase isoform2 [Source:PGSC_GENE;Acc:PGSC0003DMG400024281]

Coordinates

chr12:-:5776516..5780741

Molecular Weight (calculated)

33522.4 Da

IEP (calculated)

4.966

GRAVY (calculated)

-0.020

Length

306 amino acids

Sequence
(BLAST)

001: MTAGLSGLPS LHLKFDLPPP YILHTDCPHY WNNHLPGETE EEYSTRLANN LENLILKEGP ETVAAFIAEP VMGGAGVIIP PETYFEKIQA VLKKYDILFI
101: ADEVICGFGR LGTMFGCDKY NIKPDLVSIA KALSGGYIPI GAVLVSEEIS KVISAQSNQL GVFCHGFTYS GHPVACAVAL EALKIYKEKN ITEVVNKLSP
201: KFQEGLKAFI DSPIIGEIRG TGLVLSTEFV DSKSSNDPFP LEWGVGTYFG SQCEKHGMLV SFSGDHVNMA PPFTLSLEEL DEMISIYGKA LKDTEKRVEE
301: LKSQKK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.