Factsheet for Os02t0112900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

cytosol: 23122787

gfp PMID: 23122787 doi

Y Shimajiri, K Ozaki, K Kainou, K Akama

Department of Biological Science, Shimane University, 1060 Nishikawatsu-chou, Matsue 690-8504, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	88.82	88.64
TraesCS7A01G373400.1	Wheat	plastid	80.33	82.55
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	17.18	77.57
Os04t0614500-01	Rice	plastid	76.81	74.65
Os04t0614600-01	Rice	mitochondrion	78.05	73.06
Os08t0205900-01	Rice	mitochondrion	73.91	70.0
GSMUA_Achr5P00340_001	Banana	mitochondrion	73.08	69.9
CDY58748	Canola	mitochondrion	72.05	69.88
CDY10622	Canola	golgi	68.12	69.7
Bra023845.1-P	Field mustard	mitochondrion	71.84	69.26
CDY10619	Canola	mitochondrion	71.43	69.0
CDY37389	Canola	mitochondrion	71.43	69.0
Bra031332.1-P	Field mustard	mitochondrion	71.43	69.0
Solyc12g006470.1.1	Tomato	extracellular, nucleus	65.42	69.0
PGSC0003DMT400064961	Potato	cytosol	65.22	68.78
CDY39506	Canola	mitochondrion	71.84	68.58
VIT_03s0017g01720.t01	Wine grape	cytosol, peroxisome, plastid	69.98	68.56
Solyc08g014610.2.1	Tomato	cytosol	64.6	68.12
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	42.86	67.65
KRH24110	Soybean	mitochondrion	71.64	67.45
AT3G22200.2	Thale cress	mitochondrion	71.01	66.86
PGSC0003DMT400062372	Potato	plastid	70.39	65.89
Bra031335.1-P	Field mustard	mitochondrion	68.12	65.54
Solyc12g006450.1.1	Tomato	plastid	69.98	65.5
PGSC0003DMT400030683	Potato	mitochondrion	69.36	65.05
Solyc07g043310.2.1	Tomato	nucleus	68.94	64.66
VIT_03s0017g01760.t01	Wine grape	mitochondrion	69.98	64.14
KRH29085	Soybean	cytosol	70.19	63.96
Bra031334.1-P	Field mustard	cytosol	24.22	55.45
CDY10621	Canola	extracellular, plastid	26.29	53.81
Os05t0475400-02	Rice	peroxisome	21.95	27.11
Os05t0129100-00	Rice	plastid	16.77	24.85
Os07t0461900-01	Rice	plastid	16.77	24.7
Os03t0643300-02	Rice	mitochondrion	23.6	24.1
Os03t0171900-01	Rice	mitochondrion	24.02	23.87
Os03t0338000-01	Rice	peroxisome	23.6	23.55
Os08t0532200-01	Rice	plastid	19.05	19.25

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	EntrezGene:4328053	EMBL:AF324485	InterPro:Aminotrans_3
ProteinID:BAD07632.1	ProteinID:BAF07574.1	ProteinID:BAS76627.1	ncoils:Coil	ProteinID:EEE56165.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008483	GO:GO:0016740	GO:GO:0030170	GO:GO:0034387	GO:GO:0102351	InterPro:IPR015421
InterPro:IPR015422	EnsemblPlantsGene:Os02g0112900	EnsemblPlants:Os02t0112900-00	PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600
PANTHER:PTHR42684	PANTHER:PTHR42684:SF5	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q6ZH29
SUPFAM:SSF53383	UniParc:UPI0000236762	RefSeq:XP_015624768.1	SEG:seg	:	:

Description

gamma-aminobutyrate transaminaseSimilar to Viroid RNA-binding protein (Fragment). (Os02t0112900-00)

Coordinates

chr2:-:679468..697321

Molecular Weight (calculated)

53072.6 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.084

Length

483 amino acids

Sequence
(BLAST)

001: MTTPHGLLQY SSGAFSDQVP ADDSAEEHGV KDHAMLAPFT AAWQTAISPP LVIERSEGCY VYDVNGTKYL DALAGLLSTA LGGSEPRLVK AATEQLNKLP
101: FYHSFWNHTT RPSLDLAKEL ISMFTAREMG KVFFTNSGSE ANDSQVKIVW YYNNALGRPK KKNIISRTQS YHGTTFISAS LSGLPTLHQD FDLPGRFVLH
201: TDCPHYWRFH LPGETEEEFA TRLADNLENL ILKQGPETIA AFIAEPVIGA GGVILPPKTY FEKIQAVVKK YDILFIVDEV ITGFGRLGTM FGSDLYNIKP
301: DLVSLAKALS SAYAPIGAIL VSPEISDVIH SHSNKLGTFA HGFTYSGHPV SCAVALEALK IYRERDIPGH VTHVAQRFQE GIKAFAAGSP IVGETRGVGL
401: LIATEFTDNK SPYELFPFEW GVGEIFGQEC KKRGMMVKVL GNLIAMSPPL IITREEIDKL VSIYGEALKA TEERVAELKS KKN

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.