Factsheet for PGSC0003DMT400062372

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
nucleus 1
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006450.1.1	Tomato	plastid	96.71	96.71
PGSC0003DMT400030683	Potato	mitochondrion	80.81	80.97
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	46.51	78.43
CDY58748	Canola	mitochondrion	75.58	78.31
Bra031332.1-P	Field mustard	mitochondrion	75.78	78.2
CDY10619	Canola	mitochondrion	75.78	78.2
CDY37389	Canola	mitochondrion	75.78	78.2
PGSC0003DMT400064961	Potato	cytosol	69.19	77.95
KRH24110	Soybean	mitochondrion	77.33	77.78
Bra023845.1-P	Field mustard	mitochondrion	75.19	77.45
CDY39506	Canola	mitochondrion	75.19	76.68
VIT_03s0017g01760.t01	Wine grape	mitochondrion	78.29	76.66
CDY10622	Canola	golgi	69.38	75.85
GSMUA_Achr5P00340_001	Banana	mitochondrion	73.84	75.45
KRH29085	Soybean	cytosol	77.13	75.09
EES14702	Sorghum	mitochondrion	73.64	74.66
AT3G22200.2	Thale cress	mitochondrion	73.64	74.07
Os08t0205900-01	Rice	mitochondrion	72.87	73.73
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	73.26	73.54
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	15.12	72.9
TraesCS7D01G341900.2	Wheat	mitochondrion	71.71	72.83
Bra031335.1-P	Field mustard	mitochondrion	70.54	72.51
TraesCS7B01G246800.1	Wheat	mitochondrion	71.32	72.44
Os04t0614600-01	Rice	mitochondrion	72.09	72.09
HORVU2Hr1G098880.1	Barley	mitochondrion	70.54	71.23
EES11419	Sorghum	mitochondrion	70.54	71.23
Os04t0614500-01	Rice	plastid	68.6	71.23
TraesCS7A01G334200.1	Wheat	mitochondrion	70.74	70.74
Os02t0112900-00	Rice	cytosol	65.89	70.39
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	20.93	70.13
TraesCS2D01G418400.2	Wheat	mitochondrion	69.38	70.06
TraesCS2B01G440400.1	Wheat	golgi	69.38	70.06
TraesCS2A01G421400.1	Wheat	mitochondrion	69.38	70.06
Zm00001d026293_P001	Maize	mitochondrion	69.77	70.04
Zm00001d015445_P008	Maize	cytosol	19.38	69.93
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	65.12	69.42
Zm00001d002326_P003	Maize	mitochondrion	69.38	69.11
TraesCS7A01G373400.1	Wheat	plastid	61.24	67.23
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	70.93	65.24
Zm00001d015444_P003	Maize	mitochondrion	25.0	60.85
Bra031334.1-P	Field mustard	cytosol	22.67	55.45
CDY10621	Canola	extracellular, plastid	24.03	52.54
PGSC0003DMT400076803	Potato	cytosol, extracellular, mitochondrion	12.6	26.1
PGSC0003DMT400033328	Potato	extracellular	22.87	24.95
PGSC0003DMT400058543	Potato	cytosol, plastid	22.09	24.95
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	22.48	24.27
PGSC0003DMT400082447	Potato	cytosol	19.38	20.79

Protein Annotations

EntrezGene:102596238	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	InterPro:Aminotrans_3	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1C8Z8	PFAM:PF00202	EnsemblPlantsGene:PGSC0003DMG400024275	PGSC:PGSC0003DMG400024275
EnsemblPlants:PGSC0003DMT400062372	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR42684	PANTHER:PTHR42684:SF5	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI000296B3E1	RefSeq:XP_006351982.1	:

Description

Gamma aminobutyrate transaminase isoform3 [Source:PGSC_GENE;Acc:PGSC0003DMG400024275]

Coordinates

chr12:+:5872647..5877990

Molecular Weight (calculated)

56995.2 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.197

Length

516 amino acids

Sequence
(BLAST)

001: MAKITNLIGY GIVAATNQVG PHIKHISAVS NLQKQIVSDQ IQVRWSSTET SLKNDISATD VRGYKGHDML APFTAGWHTT DLEPLVIQKS EGSYVYDVNG
101: KKYLDALAGL WCTSLGGSEP RLVAAATKQL NELPFYHSFW NRSTKPSLDL AKELLDLFTA NKMAKAFFTN SGSEANDTQV KLVWYYNNAL GRPEKKKFIA
201: RTKSYHGSTL ISASLSGLPA LHQQFDLPAP FVLHTDCPHY WRFHQPGETE EEFSTRLANN LENLILKEGP ETIAAFIAEP VMGAGGVIPP PATYFEKVQA
301: VLKKYDILVI ADEVICGFGR LGTMFGCDKY NIKPDLVSVA KALSSGYMPI GAVLVSPEVS DVIYSQSNKL GTFSHGFTYS GHPVSCAVAL ETLKIYKERN
401: IVEQVNRISP KFQEGLKVFS DSPIIGEIRG TGLLHGTEFT DNKSPNDPFP PEWGIGAYFG AQCEKHGVLV RVAGDNIMMS PPYILSLEEI DELIMKYGKA
501: LKDTENRVEE LKFQKK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.