Factsheet for PGSC0003DMT400064961

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014610.2.1	Tomato	cytosol	96.94	96.94
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	58.08	86.93
Zm00001d019161_P001	Maize	cytosol, mitochondrion, nucleus	17.03	72.9
PGSC0003DMT400030683	Potato	mitochondrion	78.6	69.9
CDY10622	Canola	golgi	71.62	69.49
PGSC0003DMT400062372	Potato	plastid	77.95	69.19
Bra031332.1-P	Field mustard	mitochondrion	75.33	69.0
CDY10619	Canola	mitochondrion	75.33	69.0
CDY37389	Canola	mitochondrion	75.33	69.0
VIT_03s0017g01760.t01	Wine grape	mitochondrion	78.6	68.31
KRH24110	Soybean	mitochondrion	76.42	68.23
CDY58748	Canola	mitochondrion	74.02	68.07
Bra023845.1-P	Field mustard	mitochondrion	74.24	67.86
GSMUA_Achr5P00340_001	Banana	mitochondrion	74.24	67.33
CDY39506	Canola	mitochondrion	74.24	67.19
Os04t0614500-01	Rice	plastid	72.27	66.6
AT3G22200.2	Thale cress	mitochondrion	73.8	65.89
Bra031335.1-P	Field mustard	mitochondrion	72.05	65.74
Os04t0614600-01	Rice	mitochondrion	74.02	65.7
EES14702	Sorghum	mitochondrion	72.93	65.62
Os08t0205900-01	Rice	mitochondrion	72.93	65.49
KRH29085	Soybean	cytosol	75.55	65.28
Os02t0112900-00	Rice	cytosol	68.78	65.22
EES11419	Sorghum	mitochondrion	72.71	65.17
TraesCS7D01G341900.2	Wheat	mitochondrion	72.27	65.16
TraesCS2B01G440400.1	Wheat	golgi	72.49	64.97
HORVU2Hr1G098880.1	Barley	mitochondrion	72.49	64.97
TraesCS2A01G421400.1	Wheat	mitochondrion	72.49	64.97
TraesCS7B01G246800.1	Wheat	mitochondrion	72.05	64.96
Zm00001d049380_P011	Maize	endoplasmic reticulum, mitochondrion	72.49	64.59
TraesCS7B01G253600.1	Wheat	cytosol, nucleus, peroxisome	68.12	64.46
Zm00001d026293_P001	Maize	mitochondrion	72.05	64.2
TraesCS2D01G418400.2	Wheat	mitochondrion	71.4	63.99
Zm00001d002326_P003	Maize	mitochondrion	72.05	63.71
TraesCS7A01G334200.1	Wheat	mitochondrion	71.18	63.18
Zm00001d037507_P015	Maize	cytosol, nucleus, peroxisome	20.74	61.69
TraesCS7A01G373400.1	Wheat	plastid	62.88	61.28
Zm00001d015445_P008	Maize	cytosol	18.78	60.14
HORVU7Hr1G082330.2	Barley	mitochondrion, plastid	72.27	59.0
Zm00001d015444_P003	Maize	mitochondrion	25.55	55.19
Bra031334.1-P	Field mustard	cytosol	24.45	53.08
CDY10621	Canola	extracellular, plastid	25.98	50.42
PGSC0003DMT400076803	Potato	cytosol, extracellular, mitochondrion	13.97	25.7
PGSC0003DMT400058543	Potato	cytosol, plastid	25.55	25.6
PGSC0003DMT400033328	Potato	extracellular	24.89	24.1
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	25.11	24.06
PGSC0003DMT400082447	Potato	cytosol	21.83	20.79

Protein Annotations

EntrezGene:102597871	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.2.2.1	InterPro:Aminotrans_3	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008483	GO:GO:0016740	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1CD67	PFAM:PF00202	EnsemblPlantsGene:PGSC0003DMG400025228	PGSC:PGSC0003DMG400025228
EnsemblPlants:PGSC0003DMT400064961	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR42684	PANTHER:PTHR42684:SF5	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI000296936A	RefSeq:XP_015165791.1	:

Description

Gamma aminobutyrate transaminase isoform2 [Source:PGSC_GENE;Acc:PGSC0003DMG400025228]

Coordinates

chr8:-:8057030..8065286

Molecular Weight (calculated)

50603.0 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.107

Length

458 amino acids

Sequence
(BLAST)

001: MGEVNGFMGH DMLAPFTAGW QIDMGPLVIE KAEGSYVYDI NGKKYLDALS GLWCTSLGGS EARLIEAANK QLNTLPFYHS FWNRTTKPSL DLAKELLDMF
101: TAKKMAKVFF TNSGSEANDT QVKLVWYYNN ALGRPNKKKI IAQENSYHGS TYLTAGLSGL PILHQKFDLP PPRILHTQCP HYWSNHLPGE TEEEFSTRLA
201: NNLENLILKE GPETVAAFIA EPVMGGAGVI VPPATYFDKI QVVLKKYDIL FIADEVICGF GRLGTMFGCD KYNIKPDLVS LAKALSGGYV PIGAVLVSPE
301: ISNVILSESN KIGVFCHGFT YSGHPVACAV ALEALKIYKE RNILEVVNKL SSKFQEGLKA FADSPIIGEI RGTGLVLSTD FVNNKSPNDP FPYDWAVGTY
401: FGAQCQKYGM LVSFSGDHVN MAPPFSMTLE ELDEMISIYK KALKDTEKRV EELKAKKK

Best Arabidopsis Sequence Match ( AT3G22200.1 )
(BLAST)

001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK

Arabidopsis Description

POP2Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:TAIR;Acc:AT3G22200]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.