Factsheet for PGSC0003DMT400033328

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 7
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054310.2.1	Tomato	extracellular, plastid	95.77	95.77
GSMUA_Achr10P...	Banana	peroxisome	76.11	85.31
CDX90347	Canola	mitochondrion	82.03	81.51
VIT_07s0031g01330.t01	Wine grape	mitochondrion	81.18	81.36
CDY63451	Canola	mitochondrion	81.18	80.67
AT4G39660.1	Thale cress	mitochondrion	80.97	80.46
CDY41995	Canola	mitochondrion	80.76	80.25
Bra011843.1-P	Field mustard	mitochondrion	80.76	80.25
CDY42643	Canola	mitochondrion	80.55	80.04
KRH43286	Soybean	mitochondrion	80.34	80.0
KRH59427	Soybean	mitochondrion	79.49	78.83
KRH31231	Soybean	mitochondrion	78.01	78.01
TraesCS4A01G015900.1	Wheat	mitochondrion	78.01	77.04
TraesCS4D01G286900.1	Wheat	mitochondrion	77.59	76.62
HORVU4Hr1G075360.5	Barley	mitochondrion	77.38	76.41
KXG40078	Sorghum	mitochondrion	77.38	76.41
Zm00001d027861_P001	Maize	mitochondrion	77.17	76.36
TraesCS4B01G288100.1	Wheat	mitochondrion	77.17	76.2
Os03t0171900-01	Rice	mitochondrion	75.9	73.87
KRG97644	Soybean	mitochondrion	58.77	71.47
PGSC0003DMT400030976	Potato	mitochondrion, peroxisome	60.89	60.25
Bra010671.1-P	Field mustard	mitochondrion	79.92	42.95
PGSC0003DMT400058543	Potato	cytosol, plastid	26.43	27.35
PGSC0003DMT400076803	Potato	cytosol, extracellular, mitochondrion	13.32	25.3
PGSC0003DMT400064961	Potato	cytosol	24.1	24.89
PGSC0003DMT400062385	Potato	cytosol, peroxisome, plastid	15.64	24.18
PGSC0003DMT400062372	Potato	plastid	24.95	22.87
PGSC0003DMT400030683	Potato	mitochondrion	24.1	22.14
PGSC0003DMT400082447	Potato	cytosol	21.78	21.41

Protein Annotations

EntrezGene:102582419	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:6.2.4.6	InterPro:Aminotrans_3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0008453	GO:GO:0008483	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0019544	GO:GO:0030170	GO:GO:0046686	InterPro:IPR015421	InterPro:IPR015422	UniProt:M1AYY7
PFAM:PF00202	EnsemblPlantsGene:PGSC0003DMG400012800	PGSC:PGSC0003DMG400012800	EnsemblPlants:PGSC0003DMT400033328	PIRSF:PIRSF000521	ScanProsite:PS00600
PANTHER:PTHR11986	PANTHER:PTHR11986:SF77	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI00029535D6	RefSeq:XP_006354697.1	SEG:seg	:	:	:

Description

Aminotransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400012800]

Coordinates

chr4:-:52946107..52955379

Molecular Weight (calculated)

51669.4 Da

IEP (calculated)

8.273

GRAVY (calculated)

-0.168

Length

473 amino acids

Sequence
(BLAST)

001: MALQRKLLNG CAGIPKFRWL SNEGLRHFSG QVAAPTELPP FDYQPKPYKG PLADEVLEKR KKFLGPSLFH YYQKPLNIVE GKMQYLYDEN GKRYLDAFAG
101: IVTVSCGHCH PEVLDAIMEQ SKLLQHATTI YLHHAIGDFA EALASKMPGN LKVVYFVNSG TEANELAMLM ARLYSGHLNM IALRNAYHGG SSNTIGLTAL
201: NTWKYPIPQG EIHHVLNPNP YRGAFGSDAK RYAEDVQDHI DHGTSGKVAG FIAETIQGVG GTVELASGYL KLVYDIVRKA GGVCIADEVQ TGFGRTGSHY
301: WGFETQGVTP DIVTMAKGIG NGLPLGAVVT TPEIASVMAQ KIQFNTFGGN PVCSAGGHAV LKVIEKEQRQ KHCAEVGSHL IGRLRDLEKR YDIIGDVRGR
401: GLMLGIELVT DRKEKTPAKA ETGVLFEKLK DLGVLVGKGG LHGNVFRIKP PMCFSKDDAD FLVDALDYSL SKL

Best Arabidopsis Sequence Match ( AT4G39660.1 )
(BLAST)

001: MALQRQLLKR ATSDIYHRRA ISLLRTDFST SPSIADAPPH IPPFVHQPRP YKGPSADEVL QKRKKFLGPS LFHYYQKPLN IVEGKMQYLY DESGRRYLDA
101: FAGIVTVSCG HCHPDILNAI TEQSKLLQHA TTIYLHHAIG DFAEALAAKM PGNLKVVYFV NSGSEANELA MMMARLYTGS LEMISLRNAY HGGSSNTIGL
201: TALNTWKYPL PQGEIHHVVN PDPYRGVFGS DGSLYAKDVH DHIEYGTSGK VAGFIAETIQ GVGGAVELAP GYLKSVYEIV RNAGGVCIAD EVQTGFGRTG
301: SHYWGFQTQD VVPDIVTMAK GIGNGLPLGA VVTTPEIASV LASKILFNTF GGNPVCSAGG LAVLNVIDKE KRQEHCAEVG SHLIQRLKDV QKRHDIIGDV
401: RGRGLMVGIE LVSDRKDKTP AKAETSVLFE QLRELGILVG KGGLHGNVFR IKPPMCFTKD DADFLVDALD YSISRL

Arabidopsis Description

AGT2Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940M2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.