Factsheet for TraesCS1D01G074600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 16481623
plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G072200.1	Wheat	plastid	97.83	98.47
TraesCS1B01G090600.1	Wheat	plastid	98.04	98.04
HORVU1Hr1G015560.5	Barley	plastid	97.39	87.5
Os07t0461900-01	Rice	plastid	59.13	82.93
Os05t0129100-00	Rice	plastid	58.7	82.82
EES17651	Sorghum	plastid	76.96	75.97
GSMUA_Achr11P...	Banana	cytosol	58.04	72.75
GSMUA_Achr9P04450_001	Banana	cytosol	62.39	71.57
Zm00001d035443_P001	Maize	plastid	74.35	69.09
VIT_09s0002g08670.t01	Wine grape	plastid	65.22	64.79
PGSC0003DMT400058543	Potato	cytosol, plastid	63.04	63.46
KRH35638	Soybean	cytosol	63.7	63.28
GSMUA_Achr5P28220_001	Banana	cytosol	33.26	62.96
VIT_19s0027g01790.t01	Wine grape	plastid	63.7	62.74
KRH48868	Soybean	nucleus	63.7	62.74
CDY67620	Canola	mitochondrion, plastid	60.65	62.28
CDY37615	Canola	mitochondrion	60.65	62.28
Solyc08g080370.2.1	Tomato	plastid	62.17	62.17
Bra008453.1-P	Field mustard	plastid	60.43	62.05
Bra035168.1-P	Field mustard	mitochondrion	60.65	61.86
CDY39963	Canola	mitochondrion	60.43	61.64
CDX87325	Canola	mitochondrion	60.22	61.42
AT1G80600.1	Thale cress	plastid	60.43	60.83
CDY68670	Canola	cytosol	44.78	46.19
Bra008457.1-P	Field mustard	cytosol, peroxisome, plastid	45.0	42.33
TraesCS4D01G170300.1	Wheat	mitochondrion	27.39	27.45
TraesCS5D01G384500.1	Wheat	mitochondrion	26.96	26.22
TraesCS1D01G292100.1	Wheat	mitochondrion	27.17	26.21
TraesCS4D01G286900.1	Wheat	mitochondrion	25.65	24.63
TraesCS7D01G261800.1	Wheat	plastid	23.7	23.09
TraesCS2D01G418400.2	Wheat	mitochondrion	25.43	22.9
TraesCS7D01G262000.1	Wheat	mitochondrion	15.87	21.99
TraesCS7D01G341900.2	Wheat	mitochondrion	23.91	21.65

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.1.1.1.4	InterPro:AcOrn/SuccOrn_fam	InterPro:Aminotrans_3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006525	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483
GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_01107
PFAM:PF00202	PIRSF:PIRSF000521	ScanProsite:PS00600	PANTHER:PTHR11986	PANTHER:PTHR11986:SF79	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGRFAMs:TIGR00707	EnsemblPlantsGene:TraesCS1D01G074600	EnsemblPlants:TraesCS1D01G074600.1
TIGR:cd00610	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:56425505..56427717

Molecular Weight (calculated)

48474.3 Da

IEP (calculated)

7.223

GRAVY (calculated)

0.095

Length

460 amino acids

Sequence
(BLAST)

001: MNSLQSFLAV APVKPAAAAA RLPSSRRARV SACLAIPAPA PTTPAAAASA RRELSAASRA VMADEAKYIV GTYKRAQVVF VAGRGCKLYD IDGREYLDMA
101: AGIAVNALGH GDPDVDAAAA DQRGRLVHAS NVGYTVPQVE LAKRLVEASF ADRAFFANSG TEANEAAIKF ARKYQRVAHP NGDAPTEFMS FTNCFHGRTI
201: GSLALTSKVQ YREPFEPVMP GSTFVEYGNL EEAKKVIQSG KIAAVFVEPV QGEGGIHSAT KEFLQGLRDA CDEAGALLVF DEVQCGLGRT GYLWAHEVYG
301: VVPDIMTLAK PLANGLPIGV ALVTEKVAAA INYGDHGTTF GGGPFVCHAA LATLDKIQKP GFLAEVTKKG EYFKQLLKTK LSGNPHVKEI RGAGLIVGIE
401: LDVPAGPLVD ACLNAGVFLL TAGKGNVVRL VPALIVSEKE LEQAAEVIRE CLPALEASTS

Best Arabidopsis Sequence Match ( AT1G80600.1 )
(BLAST)

001: MASLSQITLP RAPSSEIGLL RRRLERPIIR TRIGFNGRIA SVLTNAGDQA VSVKASVSQK VIEEEAKVIV GTYARAPVVL SSGKGCKLFD PEGKEYLDCA
101: SGIAVNALGH GDPDWLRAVT EQAGVLAHVS NVYYTIPQIE LAKRLVASSF ADRVFFCNSG TEANEAAIKF SRKFQRFTHP EDKEVATGFI AFTNSFHGRT
201: LGALALTSKE QYRTPFEPIM PGVTFLEYGN IQAATDLIRS GKIAAVFVEP IQGEGGIYSA TKEFLQSLRS ACDAAGSLLV FDEVQCGLGR TGLMWAYEAF
301: GVTPDIMTVA KPLAGGLPIG AVLVTEKVAE TINYGDHGST FAGSPLVCSA AIAVMDKVSK PSFLSSVSNK GRYFRDLLVK KLGGNSHVKE VRGEGLIIGV
401: ELDVPASSLV DACRDSGLLI LTAGKGNVVR IVPPLVISEE EIERAVEIMS QNLTALD

Arabidopsis Description

WIN1Acetylornithine aminotransferase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M8M7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.