Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G09690.1 | KRH39309 | AT2G20130.1 | 21798944 |
| AT3G09690.1 | KRH48364 | AT2G20130.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH19822 | Soybean | cytosol | 91.62 | 92.16 |
| VIT_08s0040g02380.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 62.57 | 63.44 |
| Solyc09g007380.2.1 | Tomato | cytosol | 59.65 | 58.17 |
| KRG89038 | Soybean | cytosol, golgi, plastid | 54.58 | 57.73 |
| AT5G02970.1 | Thale cress | cytosol | 57.5 | 57.39 |
| PGSC0003DMT400004379 | Potato | cytosol | 58.87 | 57.09 |
| GSMUA_Achr6P33050_001 | Banana | cytosol | 55.75 | 56.86 |
| CDY10412 | Canola | cytosol | 57.5 | 55.98 |
| CDX70335 | Canola | cytosol | 57.5 | 55.98 |
| AT3G09690.1 | Thale cress | cytosol | 57.5 | 55.98 |
| CDY22195 | Canola | cytosol, nucleus, plastid | 56.34 | 55.79 |
| Bra009556.1-P | Field mustard | cytosol | 57.31 | 55.79 |
| CDY71255 | Canola | cytosol | 34.11 | 55.73 |
| Bra034078.1-P | Field mustard | cytosol, nucleus, plastid | 56.14 | 55.38 |
| CDY41305 | Canola | cytosol, nucleus, plastid | 55.95 | 55.19 |
| KRH24928 | Soybean | golgi, peroxisome, plasma membrane | 54.78 | 54.67 |
| GSMUA_Achr9P04350_001 | Banana | endoplasmic reticulum, extracellular, golgi | 52.83 | 53.14 |
| Os03t0288300-01 | Rice | cytosol, endoplasmic reticulum, peroxisome | 53.22 | 50.93 |
| TraesCS4D01G196900.1 | Wheat | cytosol, peroxisome, plasma membrane | 52.83 | 50.75 |
| TraesCS4B01G196600.1 | Wheat | cytosol, nucleus, plasma membrane | 52.44 | 50.56 |
| EER95045 | Sorghum | cytosol | 52.44 | 50.56 |
| Zm00001d047749_P001 | Maize | cytosol | 51.66 | 50.38 |
| TraesCS4A01G108000.1 | Wheat | cytosol, peroxisome, plasma membrane | 52.44 | 50.28 |
| Zm00001d028727_P001 | Maize | plasma membrane | 51.07 | 49.16 |
| HORVU4Hr1G056700.4 | Barley | plastid | 52.05 | 41.78 |
| Os12t0535400-01 | Rice | cytosol, plasma membrane | 12.87 | 40.99 |
| KRH17703 | Soybean | cytosol | 8.38 | 35.83 |
| KRH25210 | Soybean | cytosol | 20.66 | 29.86 |
| KRH30441 | Soybean | cytosol | 13.65 | 28.46 |
| KRH33274 | Soybean | extracellular, golgi, vacuole | 18.13 | 27.11 |
| KRH26627 | Soybean | endoplasmic reticulum, extracellular, golgi | 17.15 | 26.19 |
| KRH30836 | Soybean | mitochondrion, plastid | 19.1 | 26.06 |
| KRH67906 | Soybean | golgi, plastid | 18.71 | 25.95 |
| KRH32735 | Soybean | endoplasmic reticulum | 18.71 | 25.6 |
| KRG96190 | Soybean | extracellular, plasma membrane | 14.04 | 25.0 |
| KRH33263 | Soybean | extracellular, golgi | 14.81 | 24.52 |
Protein Annotations
| EMBL:ACUP02006116 | EnsemblPlants:KRH32415 | EnsemblPlantsGene:GLYMA_10G049800 | EntrezGene:100799698 | Gene3D:3.40.50.1820 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016787 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_1 | InterPro:IPR029058 | PANTHER:PTHR10992 |
| PANTHER:PTHR10992:SF994 | PFAM:PF00561 | ProteinID:KRH32415 | ProteinID:KRH32415.1 | ProteinID:KRH32416.1 | SEG:seg |
| SUPFAM:SSF53474 | UniParc:UPI000233C237 | UniProt:K7LHI7 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr10:+:4479118..4487463
Molecular Weight (calculated)
58561.1 Da
IEP (calculated)
5.756
GRAVY (calculated)
-0.255
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVRGRDTW TEELPSLIED SGVLYGGDPT TTTTTTTTTS FEVYAPHSES GESFKEQALG FVMAWCEILM ELGRGFRDIL RQNLMNEDSY VVRKFGGPCS
101: KVSKRLRFLN DFLPEDRDPV HAWSVVFFVF ILALAAISVD PSREAVAPAV KVRQHPPCAS RVLLPDGRYM AYHEQGVPAD TARFSLVAPH SFLSSRLAGL
201: PGVKASLLEE YGIRLVTYDL PGFGESDPHP NRNLNSSAMD VLHLVNAVNV TDKFWLLCHS SGCIHAWASL RYIPEKIAGA AMLAPMINPY DTDMTKEETK
301: RTWEKWLQRR KMMYSLARRF PKLLTFFYRK SFLPEKHDEI DKLLSFSLGK KDKLMIEEPE FEEFWQRDVE ESVRQGNIRP FIEEAVLQVS NWGFDLKELH
401: VQKKCQTRGI LLWLKSMYSQ ADCELAGFLG LTHIWQGLDD RVVPPSVMEY IERVLPEAAI HKLPNEGHFS YFYFCDQCHR QIFATLFGTP QGPVERQEET
501: ATVLEEEVSQ VPV
101: KVSKRLRFLN DFLPEDRDPV HAWSVVFFVF ILALAAISVD PSREAVAPAV KVRQHPPCAS RVLLPDGRYM AYHEQGVPAD TARFSLVAPH SFLSSRLAGL
201: PGVKASLLEE YGIRLVTYDL PGFGESDPHP NRNLNSSAMD VLHLVNAVNV TDKFWLLCHS SGCIHAWASL RYIPEKIAGA AMLAPMINPY DTDMTKEETK
301: RTWEKWLQRR KMMYSLARRF PKLLTFFYRK SFLPEKHDEI DKLLSFSLGK KDKLMIEEPE FEEFWQRDVE ESVRQGNIRP FIEEAVLQVS NWGFDLKELH
401: VQKKCQTRGI LLWLKSMYSQ ADCELAGFLG LTHIWQGLDD RVVPPSVMEY IERVLPEAAI HKLPNEGHFS YFYFCDQCHR QIFATLFGTP QGPVERQEET
501: ATVLEEEVSQ VPV
001: MEEIRGVPTW QEELASLVDA GLRYDGAPID LTAATKRSGF VSADGSGSEP KETLKDQVTG FMKSWGEMLL ELAKGCKDIV QQTVVTDDSF LVRKLRKPAA
101: KVSKKLSFLN EFLPEDRDPI HAWPVIFFVF LLALAALSFS PENDRPVTVI TKLRLHPTGA TRVQLPDGRY IAYQELGVSA ERARYSLVMP HSFLSSRLAG
201: IPGVKKSLLV EYGVRLVSYD LPGFGESDPH RGRNLSSSAS DMINLAAAIG IDEKFWLLGY STGSIHTWAG MKYFPEKIAG AAMVAPVINP YEPSMVKEEV
301: VKTWEQWLTK RKFMYFLARR FPILLPFFYR RSFLSGNLDQ LDQWMALSLG EKDKLLIKDP TFQEVYQRNV EESVRQGITK PFVEEAVLQV SNWGFTLSEF
401: RTQKKCATNG VLSWLMSMYS EAECELIGFR KPIHIWQGME DRVAPPSMSD YISRMIPEAT VHKIRNEGHF SFFYFCDECH RQIFYALFGE PKGQLERVKE
501: TEDTVVETEA HKDT
101: KVSKKLSFLN EFLPEDRDPI HAWPVIFFVF LLALAALSFS PENDRPVTVI TKLRLHPTGA TRVQLPDGRY IAYQELGVSA ERARYSLVMP HSFLSSRLAG
201: IPGVKKSLLV EYGVRLVSYD LPGFGESDPH RGRNLSSSAS DMINLAAAIG IDEKFWLLGY STGSIHTWAG MKYFPEKIAG AAMVAPVINP YEPSMVKEEV
301: VKTWEQWLTK RKFMYFLARR FPILLPFFYR RSFLSGNLDQ LDQWMALSLG EKDKLLIKDP TFQEVYQRNV EESVRQGITK PFVEEAVLQV SNWGFTLSEF
401: RTQKKCATNG VLSWLMSMYS EAECELIGFR KPIHIWQGME DRVAPPSMSD YISRMIPEAT VHKIRNEGHF SFFYFCDECH RQIFYALFGE PKGQLERVKE
501: TEDTVVETEA HKDT
Arabidopsis Description
Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYY8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.