Factsheet for TraesCS4A01G108000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G348700.1
TraesCS1B01G363400.1
TraesCS1D01G351700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09690.1	TraesCS1A01G348700.1	AT2G20130.1	21798944
AT3G09690.1	TraesCS1B01G363400.1	AT2G20130.1	21798944
AT3G09690.1	TraesCS1D01G351700.1	AT2G20130.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G196900.1	Wheat	cytosol, peroxisome, plasma membrane	97.2	97.38
TraesCS4B01G196600.1	Wheat	cytosol, nucleus, plasma membrane	96.45	96.99
Os03t0288300-01	Rice	cytosol, endoplasmic reticulum, peroxisome	83.36	83.21
EER95045	Sorghum	cytosol	81.87	82.33
Zm00001d047749_P001	Maize	cytosol	79.63	80.99
HORVU4Hr1G056700.4	Barley	plastid	96.07	80.44
Zm00001d028727_P001	Maize	plasma membrane	79.44	79.74
Os12t0535400-01	Rice	cytosol, plasma membrane	21.31	70.81
GSMUA_Achr6P33050_001	Banana	cytosol	61.12	65.01
GSMUA_Achr9P04350_001	Banana	endoplasmic reticulum, extracellular, golgi	58.5	61.37
VIT_08s0040g02380.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	54.02	57.11
VIT_06s0004g03310.t01	Wine grape	cytosol	52.34	57.03
KRG89038	Soybean	cytosol, golgi, plastid	50.09	55.26
CDY71255	Canola	cytosol	31.03	52.87
Bra009556.1-P	Field mustard	cytosol	51.96	52.75
CDY22195	Canola	cytosol, nucleus, plastid	51.03	52.7
AT5G02970.1	Thale cress	cytosol	50.47	52.53
CDY41305	Canola	cytosol, nucleus, plastid	51.03	52.5
Bra034078.1-P	Field mustard	cytosol, nucleus, plastid	51.03	52.5
KRH32415	Soybean	endoplasmic reticulum	50.28	52.44
CDX70335	Canola	cytosol	51.59	52.37
KRH19822	Soybean	cytosol	49.91	52.35
PGSC0003DMT400070409	Potato	cytosol, peroxisome, plastid	53.08	52.3
CDY10412	Canola	cytosol	51.4	52.18
KRH24928	Soybean	golgi, peroxisome, plasma membrane	50.09	52.14
Solyc11g072440.1.1	Tomato	cytosol, peroxisome, plastid	52.71	52.13
Solyc09g007380.2.1	Tomato	cytosol	51.03	51.9
PGSC0003DMT400004379	Potato	cytosol	50.84	51.42
AT3G09690.1	Thale cress	cytosol	50.28	51.04
TraesCS1A01G189300.1	Wheat	plastid	20.19	30.25
TraesCS5A01G128500.2	Wheat	golgi	19.44	29.97
TraesCS5A01G526300.3	Wheat	cytosol	19.63	28.93
TraesCS2A01G294400.1	Wheat	plastid	19.44	28.89
TraesCS6A01G160400.1	Wheat	plastid	19.07	27.49
TraesCS1A01G189200.1	Wheat	mitochondrion	20.75	25.23
TraesCS1A01G268900.1	Wheat	plastid	18.88	25.0

Protein Annotations

EnsemblPlants:TraesCS4A01G108000.1	EnsemblPlantsGene:TraesCS4A01G108000	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:IPR029058	PANTHER:PTHR10992
PANTHER:PTHR10992:SF994	PFAM:PF00561	SEG:seg	SUPFAM:SSF53474	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr4A:+:125378316..125385164

Molecular Weight (calculated)

58662.4 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.247

Length

535 amino acids

Sequence
(BLAST)

001: MAAAATMTWH EELATLVGDT GVRLPAAAGG AAPAPNSAAA VGGGWYGEEE EGKVEEGWAQ QARGFAESTA EMLRELGLGV WDVAAQSLAG AEDSELARRL
101: RRPAAAAGKR LSFMNEYLPE DRDPVRCWVV VAAVAFVALL VLGVGGGDDT PVEQPKKLYI SPPNAKRFQL PDGRHLAYEE KGISADRARF SLVAPHSFLS
201: SRLAGIPGIS SSLLEEFGAR LVTYDLPGFG ESDPHPGRNL NSSALDMLHL ADALGIVDKF WVVGYSGGGM HAWSALRYIP DRVAGAAMFA PMANPYDSKM
301: TKDEKRKIWD RWSTKRKLMH ILARRFPSLL RLFYHTSFLS GKQGQTESWL SLSMGKKDKT LLEAPMFNAF WEKDVAESVR QGDAQPFVEE AVLQVSDWGF
401: SLSDIQMQKK EDQGVFEFIK SLFSQAEREW VGFLGPIHIW QGMDDRVVPP SATEFARRMV PGATVHKLLD EGHFSYFCFC DECHRQIFST LFGTPQGPLN
501: PALESSEVAP EPVEETSPAY DEEVAGQEQE TSGVA

Best Arabidopsis Sequence Match ( AT5G02970.1 )
(BLAST)

001: MEEIRGVPTW QEELASLVDA GLRYDGAPID LTAATKRSGF VSADGSGSEP KETLKDQVTG FMKSWGEMLL ELAKGCKDIV QQTVVTDDSF LVRKLRKPAA
101: KVSKKLSFLN EFLPEDRDPI HAWPVIFFVF LLALAALSFS PENDRPVTVI TKLRLHPTGA TRVQLPDGRY IAYQELGVSA ERARYSLVMP HSFLSSRLAG
201: IPGVKKSLLV EYGVRLVSYD LPGFGESDPH RGRNLSSSAS DMINLAAAIG IDEKFWLLGY STGSIHTWAG MKYFPEKIAG AAMVAPVINP YEPSMVKEEV
301: VKTWEQWLTK RKFMYFLARR FPILLPFFYR RSFLSGNLDQ LDQWMALSLG EKDKLLIKDP TFQEVYQRNV EESVRQGITK PFVEEAVLQV SNWGFTLSEF
401: RTQKKCATNG VLSWLMSMYS EAECELIGFR KPIHIWQGME DRVAPPSMSD YISRMIPEAT VHKIRNEGHF SFFYFCDECH RQIFYALFGE PKGQLERVKE
501: TEDTVVETEA HKDT

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYY8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.