Factsheet for TraesCS4B01G196600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G348700.1
TraesCS1B01G363400.1
TraesCS1D01G351700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09690.1	TraesCS1A01G348700.1	AT2G20130.1	21798944
AT3G09690.1	TraesCS1B01G363400.1	AT2G20130.1	21798944
AT3G09690.1	TraesCS1D01G351700.1	AT2G20130.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G196900.1	Wheat	cytosol, peroxisome, plasma membrane	97.74	97.38
TraesCS4A01G108000.1	Wheat	cytosol, peroxisome, plasma membrane	96.99	96.45
Os03t0288300-01	Rice	cytosol, endoplasmic reticulum, peroxisome	83.46	82.84
EER95045	Sorghum	cytosol	82.52	82.52
Zm00001d047749_P001	Maize	cytosol	80.08	80.99
HORVU4Hr1G056700.4	Barley	plastid	97.18	80.91
Zm00001d028727_P001	Maize	plasma membrane	79.32	79.17
Os12t0535400-01	Rice	cytosol, plasma membrane	21.43	70.81
GSMUA_Achr6P33050_001	Banana	cytosol	62.03	65.61
GSMUA_Achr9P04350_001	Banana	endoplasmic reticulum, extracellular, golgi	58.83	61.37
VIT_08s0040g02380.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	54.32	57.11
VIT_06s0004g03310.t01	Wine grape	cytosol	52.63	57.03
KRG89038	Soybean	cytosol, golgi, plastid	50.56	55.46
Bra009556.1-P	Field mustard	cytosol	52.63	53.13
AT5G02970.1	Thale cress	cytosol	51.13	52.92
CDY22195	Canola	cytosol, nucleus, plastid	51.5	52.9
CDY71255	Canola	cytosol	31.2	52.87
CDX70335	Canola	cytosol	52.26	52.75
Bra034078.1-P	Field mustard	cytosol, nucleus, plastid	51.5	52.69
CDY10412	Canola	cytosol	52.07	52.56
KRH24928	Soybean	golgi, peroxisome, plasma membrane	50.75	52.53
CDY41305	Canola	cytosol, nucleus, plastid	51.32	52.5
Solyc09g007380.2.1	Tomato	cytosol	51.88	52.47
KRH32415	Soybean	endoplasmic reticulum	50.56	52.44
KRH19822	Soybean	cytosol	50.0	52.16
PGSC0003DMT400070409	Potato	cytosol, peroxisome, plastid	53.2	52.12
PGSC0003DMT400004379	Potato	cytosol	51.5	51.8
Solyc11g072440.1.1	Tomato	cytosol, peroxisome, plastid	52.63	51.76
AT3G09690.1	Thale cress	cytosol	50.94	51.42
TraesCS1B01G197000.1	Wheat	plastid	20.49	30.53
TraesCS1B01G196900.1	Wheat	endoplasmic reticulum, plasma membrane	21.05	30.43
TraesCS2B01G310800.1	Wheat	endoplasmic reticulum, golgi, plastid	19.74	29.17
TraesCS4B01G356900.2	Wheat	cytosol	19.74	28.85
TraesCS6B01G191000.1	Wheat	plastid	19.17	27.64

Protein Annotations

EnsemblPlants:TraesCS4B01G196600.1	EnsemblPlantsGene:TraesCS4B01G196600	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:IPR029058	PANTHER:PTHR10992
PANTHER:PTHR10992:SF994	PFAM:PF12697	SEG:seg	SUPFAM:SSF53474	MapMan:35.2	:

Description

No Description!

Coordinates

chr4B:-:423358015..423362789

Molecular Weight (calculated)

58592.2 Da

IEP (calculated)

4.930

GRAVY (calculated)

-0.305

Length

532 amino acids

Sequence
(BLAST)

001: MAAATTMTWH EELATLVGDT GARLPAAAAP APNSAAAVGA GWYGEEEEGK MEEGWAQQAR GFAESTAEML RELGLGVWDV AAQSLAGAED SELARRLRRP
101: AAAAGKRLSF MNEYLPEDRD PVRCWAVVAA VAFVALLVLG VGSSDDTPVE QPKKLYISPP NAKRFQLPDG RHLAYEEKGI SADRARFSLV APHSFLSSRL
201: AGIPGISSSL LEEFGARLVT YDLPGFGESD PHPGRNLNSS ALDMLHLADA LGIVDKFWVV GYSGGGMHAW SALRYIPDRV AGAAMFAPMA NPYDSKMTKD
301: EKRKIWDRWS TKRKLMHILA RRFPSLLRLF YHRSFLSGKQ GQPESWLSLS MGKKDKTLLE APTFNAFWEK DVAESVRQGD AQPFVEEAVL QVSDWGFSLS
401: DIQMQKKEDQ GVFEFIKSLF SQAEREWVGF LGPIHIWQGM DDRVVPPSAT EFARRMVPGA TVHKLLDEGH FSYFCFCDEC HRQIFSTLFG TPQGPLNPAP
501: ESSEAAPEPA EETSPAYDEE VAEQEQETSG LA

Best Arabidopsis Sequence Match ( AT5G02970.1 )
(BLAST)

001: MEEIRGVPTW QEELASLVDA GLRYDGAPID LTAATKRSGF VSADGSGSEP KETLKDQVTG FMKSWGEMLL ELAKGCKDIV QQTVVTDDSF LVRKLRKPAA
101: KVSKKLSFLN EFLPEDRDPI HAWPVIFFVF LLALAALSFS PENDRPVTVI TKLRLHPTGA TRVQLPDGRY IAYQELGVSA ERARYSLVMP HSFLSSRLAG
201: IPGVKKSLLV EYGVRLVSYD LPGFGESDPH RGRNLSSSAS DMINLAAAIG IDEKFWLLGY STGSIHTWAG MKYFPEKIAG AAMVAPVINP YEPSMVKEEV
301: VKTWEQWLTK RKFMYFLARR FPILLPFFYR RSFLSGNLDQ LDQWMALSLG EKDKLLIKDP TFQEVYQRNV EESVRQGITK PFVEEAVLQV SNWGFTLSEF
401: RTQKKCATNG VLSWLMSMYS EAECELIGFR KPIHIWQGME DRVAPPSMSD YISRMIPEAT VHKIRNEGHF SFFYFCDECH RQIFYALFGE PKGQLERVKE
501: TEDTVVETEA HKDT

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYY8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.