Factsheet for PGSC0003DMT400004379

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000833

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09690.1	PGSC0003DMT400000833	AT2G20130.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007380.2.1	Tomato	cytosol	95.27	95.82
VIT_08s0040g02380.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	61.44	64.23
GSMUA_Achr6P33050_001	Banana	cytosol	56.9	59.84
KRH32415	Soybean	endoplasmic reticulum	57.09	58.87
KRH19822	Soybean	cytosol	55.95	58.04
CDY71255	Canola	cytosol	33.65	56.69
GSMUA_Achr9P04350_001	Banana	endoplasmic reticulum, extracellular, golgi	53.12	55.1
AT5G02970.1	Thale cress	cytosol	53.31	54.86
CDY22195	Canola	cytosol, nucleus, plastid	53.5	54.63
Bra034078.1-P	Field mustard	cytosol, nucleus, plastid	53.31	54.23
AT3G09690.1	Thale cress	cytosol	53.88	54.08
CDX70335	Canola	cytosol	53.69	53.89
CDY41305	Canola	cytosol, nucleus, plastid	52.93	53.85
CDY10412	Canola	cytosol	53.12	53.32
Bra009556.1-P	Field mustard	cytosol	53.12	53.32
Os03t0288300-01	Rice	cytosol, endoplasmic reticulum, peroxisome	52.36	51.68
TraesCS4B01G196600.1	Wheat	cytosol, nucleus, plasma membrane	51.8	51.5
TraesCS4D01G196900.1	Wheat	cytosol, peroxisome, plasma membrane	51.8	51.31
TraesCS4A01G108000.1	Wheat	cytosol, peroxisome, plasma membrane	51.42	50.84
EER95045	Sorghum	cytosol	50.85	50.56
PGSC0003DMT400070409	Potato	cytosol, peroxisome, plastid	51.42	50.09
Zm00001d047749_P001	Maize	cytosol	49.34	49.62
Zm00001d028727_P001	Maize	plasma membrane	49.72	49.34
HORVU4Hr1G056700.4	Barley	plastid	51.42	42.57
Os12t0535400-01	Rice	cytosol, plasma membrane	12.85	42.24
PGSC0003DMT400030589	Potato	extracellular	19.85	29.66
PGSC0003DMT400061630	Potato	endoplasmic reticulum, extracellular, golgi	19.09	28.45
PGSC0003DMT400019164	Potato	extracellular, golgi	18.15	28.24
PGSC0003DMT400006848	Potato	plastid	19.47	27.84
PGSC0003DMT400060120	Potato	extracellular, golgi, vacuole	17.77	27.57
PGSC0003DMT400018400	Potato	extracellular	18.34	27.4
PGSC0003DMT400006849	Potato	mitochondrion, plastid	19.09	26.58
PGSC0003DMT400006847	Potato	golgi, mitochondrion, peroxisome, plastid	18.71	26.33
PGSC0003DMT400030553	Potato	cytosol	15.88	26.01
PGSC0003DMT400061634	Potato	plastid	19.66	25.37

Protein Annotations

EnsemblPlants:PGSC0003DMT400004379	EnsemblPlantsGene:PGSC0003DMG400001739	EntrezGene:102584571	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:IPR029058
PANTHER:PTHR10992	PANTHER:PTHR10992:SF994	PFAM:PF00561	PGSC:PGSC0003DMG400001739	RefSeq:XP_006361784.1	SEG:seg
SUPFAM:SSF53474	UniParc:UPI000296D222	UniProt:M0ZNC1	MapMan:35.2	:	:

Description

Hydrolase, alpha/beta fold family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001739]

Coordinates

chr9:-:6419423..6423871

Molecular Weight (calculated)

59697.9 Da

IEP (calculated)

5.293

GRAVY (calculated)

-0.264

Length

529 amino acids

Sequence
(BLAST)

001: MADVAVAKSW RDELASLVED SGIRFAGDAV EISAPTYSTP AFEEKRSVYE SPAIEEVVAE PESFKDQIEG FAKAWGEMLL ELMRGCRDVV QQSLLTEESY
101: IVQKTKGPLA EASRRLSVLN EFLPEDRDPV HAWPVIFFVF ILALSALSVN SKQETSGKPV KEVHIHPPSA TRILLPDGRH MAYQEIGVPS NKARYSVIAP
201: HGFLSSRLGG IPGVKVSLLE EFGIRLVTYD LPGFGESDSH PERNLNSSAL DMQYLADALG VNSKFWVLGY SSGAIHAWAA MKFISDRVAG VAMFSPFINP
301: YESSMTKEET RETWNKWTRK RKLTYYLARR SPKFLDYFYH RTFLSGKHGQ IDKYMSLSLG QKDKALIREP AFEEFWHRDV EESIRQGSTK PFIEEASLQV
401: SNWGFNLVDL QVQEKCSGKG ILSWLKFGYG QVRCELTGFL GPVHIWQGLD DQVVPHQMTD YVARILPRVV VHKLPDEGHF SYFFFCDECH RQMFLTIFGS
501: PQGLLEESIE APTEEDGEQE AANLNLAAE

Best Arabidopsis Sequence Match ( AT5G02970.1 )
(BLAST)

001: MEEIRGVPTW QEELASLVDA GLRYDGAPID LTAATKRSGF VSADGSGSEP KETLKDQVTG FMKSWGEMLL ELAKGCKDIV QQTVVTDDSF LVRKLRKPAA
101: KVSKKLSFLN EFLPEDRDPI HAWPVIFFVF LLALAALSFS PENDRPVTVI TKLRLHPTGA TRVQLPDGRY IAYQELGVSA ERARYSLVMP HSFLSSRLAG
201: IPGVKKSLLV EYGVRLVSYD LPGFGESDPH RGRNLSSSAS DMINLAAAIG IDEKFWLLGY STGSIHTWAG MKYFPEKIAG AAMVAPVINP YEPSMVKEEV
301: VKTWEQWLTK RKFMYFLARR FPILLPFFYR RSFLSGNLDQ LDQWMALSLG EKDKLLIKDP TFQEVYQRNV EESVRQGITK PFVEEAVLQV SNWGFTLSEF
401: RTQKKCATNG VLSWLMSMYS EAECELIGFR KPIHIWQGME DRVAPPSMSD YISRMIPEAT VHKIRNEGHF SFFYFCDECH RQIFYALFGE PKGQLERVKE
501: TEDTVVETEA HKDT

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYY8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.