Factsheet for PGSC0003DMT400030589

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009500.2.1	Tomato	cytosol	93.79	96.51
PGSC0003DMT400018400	Potato	extracellular	73.73	73.73
PGSC0003DMT400030553	Potato	cytosol	51.41	56.35
Bra018636.1-P	Field mustard	cytosol	48.02	53.12
CDX93573	Canola	cytosol	47.46	52.83
Bra030720.1-P	Field mustard	nucleus	42.94	52.23
AT1G08310.2	Thale cress	cytosol	46.61	51.89
GSMUA_Achr10P...	Banana	cytosol	12.15	50.59
CDY31156	Canola	cytosol	46.33	49.85
PGSC0003DMT400019164	Potato	extracellular, golgi	43.5	45.29
CDY30542	Canola	mitochondrion	47.18	43.38
PGSC0003DMT400060120	Potato	extracellular, golgi, vacuole	38.98	40.47
PGSC0003DMT400061630	Potato	endoplasmic reticulum, extracellular, golgi	40.11	40.0
CDY32828	Canola	nucleus	46.89	39.81
CDY68993	Canola	plasma membrane	20.9	39.57
CDX95073	Canola	golgi, vacuole	46.33	39.42
CDX77121	Canola	mitochondrion	23.45	38.78
PGSC0003DMT400006849	Potato	mitochondrion, plastid	40.11	37.37
PGSC0003DMT400006848	Potato	plastid	38.7	37.03
PGSC0003DMT400006847	Potato	golgi, mitochondrion, peroxisome, plastid	38.98	36.7
PGSC0003DMT400061634	Potato	plastid	40.96	35.37
Bra034356.1-P	Field mustard	mitochondrion	49.72	27.46
PGSC0003DMT400004379	Potato	cytosol	29.66	19.85
PGSC0003DMT400070409	Potato	cytosol, peroxisome, plastid	24.29	15.84
CDX77120	Canola	extracellular	15.25	15.04

Protein Annotations

EnsemblPlants:PGSC0003DMT400030589	EnsemblPlantsGene:PGSC0003DMG400011713	EntrezGene:102587476	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4
InterPro:IPR029058	PANTHER:PTHR10992	PANTHER:PTHR10992:SF774	PFAM:PF12146	PGSC:PGSC0003DMG400011713	RefSeq:XP_006365778.1
RefSeq:XP_015160073.1	SignalP:SignalP-noTM	SUPFAM:SSF53474	UniParc:UPI0002964F41	UniProt:M1AUG9	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011713]

Coordinates

chr1:+:7410363..7412416

Molecular Weight (calculated)

40527.1 Da

IEP (calculated)

8.288

GRAVY (calculated)

-0.224

Length

354 amino acids

Sequence
(BLAST)

001: MVFRRILVLM MGCLGCADQT TEQNANNNME SKSSVVDESG ITTLRVRLSD GRYLAYRERG VPKNKCKYSI ILVHGFGSSK EMSFMASDKL LDGMGIYLLI
101: YDRAGYGESD PNPKRSVKSE ASDIEELADQ LQLGSKYYVI GVSLGCYPAW SCIKRIPQKL AGVALIVPFI NYKWRSLPDD LTKDDYRKQL CRLMLLLTCY
201: TPGLLHWWFT QKMFPSATVL EGNPKFFCDK DLAVLKNTDG YQLFTQDGIR KRRVFDSLRR DFIVAFSKWD FDPLELSNPY TQNESSVHIW QGYEDKVVPV
301: QLQRHVSKTL PWIRYHEVPD GGHLLVYDTV VCEAVLKSLL LGEDPPLYRP KLVL

Best Arabidopsis Sequence Match ( AT3G44510.2 )
(BLAST)

001: MEEHLQGRIK LHDGRYLAYK ERGVPKDDAK FTIVLVHGFG SSKDMNFNVS QELVNEIGIY FVLYDRAGYG ESDPNPKRSL KSEAYDVQEL ADGLEIGSRF
101: YLIGISMGSY TVWSCLKHIP QRLAGVAMVA PVVNFRWPSI PKSLMPKDYR REVAKWSVWI ANYFPGLLQW LVTQNMFSTT SMLEKNPVYF NDQDIEVLKH
201: IKGFPMLTKE KLRERGVFGT LRSDFLVAFG DWDFDPADLP DPSLSGPEKG SSSVHIWQGY EDKVMPFQLQ RCLCRKLPWI RYHEVPKGGH LIVHYDGICD
301: AILKSLLLGE DLPMYKPKAV ITEPA

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.