CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034356.1-P	Field mustard	mitochondrion	98.61	55.23
CDY35686	Canola	endoplasmic reticulum, golgi	64.07	40.56
CDY68993	Canola	plasma membrane	20.06	38.5
GSMUA_Achr10P...	Banana	cytosol	8.64	36.47
CDY68922	Canola	cytosol, mitochondrion	16.99	29.33
CDY68104	Canola	cytosol	11.14	24.54
CDY30542	Canola	mitochondrion	24.79	23.12
CDX93573	Canola	cytosol	20.06	22.64
CDY31156	Canola	cytosol	18.94	20.67
CDY32828	Canola	nucleus	22.01	18.94
CDY60542	Canola	cytosol	16.43	17.99
CDX95073	Canola	golgi, vacuole	20.06	17.31
PGSC0003DMT400030589	Potato	extracellular	15.04	15.25
Solyc01g009500.2.1	Tomato	cytosol	14.48	15.12
Solyc06g074330.2.1	Tomato	cytosol	13.65	14.24
PGSC0003DMT400030553	Potato	cytosol	12.81	14.24
Solyc01g009480.2.1	Tomato	cytosol	12.81	14.24
PGSC0003DMT400018400	Potato	extracellular	13.65	13.84
CDY26931	Canola	endoplasmic reticulum, extracellular	11.7	12.35
CDY09141	Canola	endoplasmic reticulum, golgi	11.7	12.32
CDY65400	Canola	endoplasmic reticulum, golgi, vacuole	11.98	12.29
CDX76158	Canola	endoplasmic reticulum, golgi, vacuole	11.98	12.29
CDX88793	Canola	extracellular, golgi	11.7	12.28
CDX92349	Canola	endoplasmic reticulum, golgi	11.14	11.76
CDY67186	Canola	extracellular	9.75	11.08
CDY43140	Canola	extracellular	10.03	10.81
CDY49719	Canola	extracellular	10.31	10.79
CDY49935	Canola	extracellular	9.75	10.51
CDY21213	Canola	extracellular	9.75	10.51
CDX75055	Canola	plastid	10.59	10.47
CDY41508	Canola	cytosol, endoplasmic reticulum, golgi, mitochondrion	10.31	10.39
CDY65628	Canola	cytosol, golgi, peroxisome	10.31	10.39
CDY21822	Canola	cytosol, golgi, peroxisome	10.86	10.24
CDY21214	Canola	endoplasmic reticulum, golgi, plastid	10.03	10.23
CDY49934	Canola	endoplasmic reticulum, golgi	10.03	10.23
CDY43139	Canola	extracellular, golgi	9.47	10.21
CDY67187	Canola	extracellular, golgi	9.47	10.21
CDX84140	Canola	plastid	10.31	10.19
CDY39579	Canola	cytosol, endoplasmic reticulum, peroxisome	10.59	10.19
CDX77906	Canola	cytosol, golgi, peroxisome	10.59	10.16
Solyc06g074340.2.1	Tomato	endoplasmic reticulum, golgi	9.75	9.92
CDX73073	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	8.91	8.89
CDX96530	Canola	endoplasmic reticulum, golgi	8.91	8.82
CDY10412	Canola	cytosol	8.08	5.5
CDX70335	Canola	cytosol	8.08	5.5
CDY22195	Canola	cytosol, nucleus, plastid	6.69	4.63
CDY41305	Canola	cytosol, nucleus, plastid	6.69	4.62
CDX77121	Canola	mitochondrion	2.23	3.74
CDX78221	Canola	endoplasmic reticulum, extracellular, plasma membrane	0.56	1.68
CDY70769	Canola	cytosol	0.0	0.0
CDY71255	Canola	cytosol	0.0	0.0
CDY72669	Canola	cytosol	0.0	0.0
CDX71001	Canola	extracellular	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.10	Gene3D:3.30.190.20	Gene3D:3.40.50.1820	Gene3D:3.40.50.790	GO:A0A078CJR7	InterPro:AB_hydrolase
EnsemblPlants:CDX77120	ProteinID:CDX77120	ProteinID:CDX77120.1	EnsemblPlantsGene:GSBRNA2T00127720001	InterPro:IPR016095	InterPro:IPR029058
PFAM:PF00687	ScanProsite:PS01199	PANTHER:PTHR23105	PANTHER:PTHR23105:SF98	InterPro:Ribosomal_L1-like	InterPro:Ribosomal_L1/biogenesis
InterPro:Ribosomal_L1_3-a/b-sand	InterPro:Ribosomal_L1_CS	SUPFAM:SSF53474	SUPFAM:SSF56808	UniParc:UPI0004EF29AE	SEG:seg

Description

BnaC04g39150D

Coordinates

chrLK031809:-:1251069..1256506

Molecular Weight (calculated)

41493.3 Da

IEP (calculated)

10.544

GRAVY (calculated)

-0.409

Length

359 amino acids

Sequence
(BLAST)

001: MLTKDKLRER SVFDTLKDDF LAGFGHWDFD PSDVRMSGEN SVHIWHGKED KVVPFQLHRC ILKKLPWIKY HEIPHGGHLI VHYDVVRPIA LARTFRILQW
101: VLKLCKALYI DHEERIIRLK RRVRVSSASP LRFRDSFNCE KLKMSKLQSE ALREAITTIK GKSEDKKRNF VETVELQIGL KNYDPQKDKR FSGSVKLPHI
201: PRPKMKVCML GDAQHVEEAE KMGLDSMDVE ALKKLNKNKK LVKKLAKKYH AFLASESVIK QIPRLLGPGL NKAGKFPTLV SHQESLEGKV NETKATVKFQ
301: LKKVLCMGVA VGNLSMEEKQ LFQNVQMSIN FLVSLLKKNW QNVRCLYLKS TMGPPQRIF

Best Arabidopsis Sequence Match ( AT2G27530.2 )
(BLAST)

001: MSKLQSEAVR EAITTIKGKS EEKKRNFVET VELQIGLKNY DPQKDKRFSG SVKLPHIPRP KMKICMLGDA QHVEEAEKMG LSNMDVEALK KLNKNKKLVK
101: KLAKSYHAFL ASESVIKQIP RLLGPGLNKA GKFPTLVSHQ ESLEAKVNET KATVKFQLKK VLCMGVAVGN LSMEEKQLFQ NVQMSVNFLV SLLKKNWQNV
201: RCLYLKSTMG PPQRIF

Arabidopsis Description

RPL10AB60S ribosomal protein L10a-2 [Source:UniProtKB/Swiss-Prot;Acc:P59230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.