CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, cytosol

Predictor Summary:

cytosol 2
golgi 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65628	Canola	cytosol, golgi, peroxisome	98.6	98.6
Bra038616.1-P	Field mustard	mitochondrion	96.35	98.28
CDY49719	Canola	extracellular	64.33	66.76
CDY39579	Canola	cytosol, endoplasmic reticulum, peroxisome	66.01	63.0
CDX77906	Canola	cytosol, golgi, peroxisome	64.04	60.96
CDY21822	Canola	cytosol, golgi, peroxisome	64.33	60.1
CDX96530	Canola	endoplasmic reticulum, golgi	56.74	55.65
CDX73073	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	56.18	55.56
CDX84140	Canola	plastid	53.65	52.62
CDX75055	Canola	plastid	53.37	52.34
CDY72669	Canola	cytosol	18.26	52.0
CDY70769	Canola	cytosol	17.98	51.2
CDX92349	Canola	endoplasmic reticulum, golgi	42.7	44.71
CDY09141	Canola	endoplasmic reticulum, golgi	42.7	44.57
CDY26931	Canola	endoplasmic reticulum, extracellular	42.42	44.41
CDX88793	Canola	extracellular, golgi	42.42	44.15
CDY49935	Canola	extracellular	39.61	42.34
CDY21213	Canola	extracellular	39.33	42.04
CDY60542	Canola	cytosol	37.92	41.16
CDX76158	Canola	endoplasmic reticulum, golgi, vacuole	40.45	41.14
CDY43140	Canola	extracellular	38.48	41.14
CDX71001	Canola	extracellular	25.0	41.01
CDY65400	Canola	endoplasmic reticulum, golgi, vacuole	40.17	40.86
CDY67187	Canola	extracellular, golgi	38.2	40.84
CDY67186	Canola	extracellular	36.24	40.82
CDY43139	Canola	extracellular, golgi	37.92	40.54
CDY49934	Canola	endoplasmic reticulum, golgi	39.89	40.34
CDY21214	Canola	endoplasmic reticulum, golgi, plastid	39.61	40.06
CDY68104	Canola	cytosol	18.26	39.88
CDX93573	Canola	cytosol	33.71	37.74
CDY31156	Canola	cytosol	34.27	37.08
CDX77121	Canola	mitochondrion	21.35	35.51
CDY30542	Canola	mitochondrion	37.92	35.06
CDY68922	Canola	cytosol, mitochondrion	19.94	34.13
CDX78221	Canola	endoplasmic reticulum, extracellular, plasma membrane	10.39	31.09
CDY32828	Canola	nucleus	32.58	27.82
CDX95073	Canola	golgi, vacuole	32.02	27.4
CDY35686	Canola	endoplasmic reticulum, golgi	42.7	26.81
CDY68993	Canola	plasma membrane	12.36	23.53
CDY71255	Canola	cytosol	17.13	19.43
CDY41305	Canola	cytosol, nucleus, plastid	26.97	18.46
CDY10412	Canola	cytosol	27.25	18.41
CDY22195	Canola	cytosol, nucleus, plastid	26.69	18.34
CDX70335	Canola	cytosol	26.69	18.03
CDX77120	Canola	extracellular	10.39	10.31

Protein Annotations

EnsemblPlants:CDY41508	EnsemblPlantsGene:GSBRNA2T00073121001	Gene3D:3.40.50.1820	GO:A0A078HXQ0	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:IPR029058	PANTHER:PTHR10992	PANTHER:PTHR10992:SF740
PFAM:PF12697	ProteinID:CDY41508	ProteinID:CDY41508.1	SEG:seg	SUPFAM:SSF53474	TMHMM:TMhelix
UniParc:UPI0004EEF4C5	UniProt:A0A078HXQ0	MapMan:35.2	:	:	:

Description

BnaA06g22610DBnaA06g22610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXQ0]

Coordinates

chrLK032499:-:58224..59579

Molecular Weight (calculated)

41132.5 Da

IEP (calculated)

7.429

GRAVY (calculated)

-0.183

Length

356 amino acids

Sequence
(BLAST)

001: METEREIMSR GRRRTHTKFS FGVVRLVLSV GVLACVYQSV QPPPPKMFTA VTSPRIKLRD GRHLAYKELG APREEAKFKM IYIHGFDSCM HDSFFFHNLS
101: PALLEELKIC IVSFDRPGYG ESDPDPNRTP RSIAFDIEEL ADGLGLGPKF YVIGFSMGGQ IIWSCLHYIP HRLAGAAMVA PVVNYWWRNL PAKLSKEALS
201: LMLPRDQWML RVAHYAPWLT FWWNTQRWFS IASYISCDPS ILSFQDKEIF SRLGFNDLNQ AYARKQGEYE SLHRDLMIGY GHWEFDPLDV QNPFKNSNGS
301: VHLWHGDEDM FVPVSLQRFI ISKLPWVRYH EVTASGHFFP SLMVDEIVKT LFVGED

Best Arabidopsis Sequence Match ( AT3G48410.1 )
(BLAST)

001: MAGEEIEREK KSAASARTHT RNNTQQSSSS GYLKTLLLVT FVGVLAWVYQ TIQPPPAKIV GSPGGPTVTS PRIKLRDGRH LAYTEFGIPR DEAKFKIINI
101: HGFDSCMRDS HFANFLSPAL VEELRIYIVS FDRPGYGESD PNLNGSPRSI ALDIEELADG LGLGPQFYLF GYSMGGEITW ACLNYIPHRL AGAALVAPAI
201: NYWWRNLPGD LTREAFSLMH PADQWSLRVA HYAPWLTYWW NTQKWFPISN VIAGNPIIFS RQDMEILSKL GFVNPNRAYI RQQGEYVSLH RDLNVAFSSW
301: EFDPLDLQDP FPNNNGSVHV WNGDEDKFVP VKLQRYVASK LPWIRYHEIS GSGHFVPFVE GMTDKIIKSL LVGEEDVSES REASV

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMU3]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.