Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- golgi 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41508 | Canola | cytosol, endoplasmic reticulum, golgi, mitochondrion | 98.6 | 98.6 |
| Bra038616.1-P | Field mustard | mitochondrion | 95.51 | 97.42 |
| CDY49719 | Canola | extracellular | 64.04 | 66.47 |
| CDY39579 | Canola | cytosol, endoplasmic reticulum, peroxisome | 66.01 | 63.0 |
| CDX77906 | Canola | cytosol, golgi, peroxisome | 64.04 | 60.96 |
| CDY21822 | Canola | cytosol, golgi, peroxisome | 64.33 | 60.1 |
| CDX96530 | Canola | endoplasmic reticulum, golgi | 56.46 | 55.37 |
| CDX73073 | Canola | endoplasmic reticulum, golgi, mitochondrion, vacuole | 55.9 | 55.28 |
| CDX84140 | Canola | plastid | 53.37 | 52.34 |
| CDX75055 | Canola | plastid | 53.09 | 52.07 |
| CDY72669 | Canola | cytosol | 17.98 | 51.2 |
| CDY70769 | Canola | cytosol | 17.7 | 50.4 |
| CDX92349 | Canola | endoplasmic reticulum, golgi | 42.42 | 44.41 |
| CDY09141 | Canola | endoplasmic reticulum, golgi | 42.42 | 44.28 |
| CDY26931 | Canola | endoplasmic reticulum, extracellular | 42.13 | 44.12 |
| CDX88793 | Canola | extracellular, golgi | 42.13 | 43.86 |
| CDY49935 | Canola | extracellular | 39.61 | 42.34 |
| CDY21213 | Canola | extracellular | 39.33 | 42.04 |
| CDY43140 | Canola | extracellular | 38.48 | 41.14 |
| CDX76158 | Canola | endoplasmic reticulum, golgi, vacuole | 40.17 | 40.86 |
| CDY60542 | Canola | cytosol | 37.64 | 40.85 |
| CDY67187 | Canola | extracellular, golgi | 38.2 | 40.84 |
| CDY67186 | Canola | extracellular | 36.24 | 40.82 |
| CDY65400 | Canola | endoplasmic reticulum, golgi, vacuole | 39.89 | 40.57 |
| CDX71001 | Canola | extracellular | 24.72 | 40.55 |
| CDY43139 | Canola | extracellular, golgi | 37.92 | 40.54 |
| CDY49934 | Canola | endoplasmic reticulum, golgi | 39.89 | 40.34 |
| CDY21214 | Canola | endoplasmic reticulum, golgi, plastid | 39.61 | 40.06 |
| CDY68104 | Canola | cytosol | 18.26 | 39.88 |
| CDX93573 | Canola | cytosol | 33.43 | 37.42 |
| CDY31156 | Canola | cytosol | 33.99 | 36.78 |
| CDX77121 | Canola | mitochondrion | 21.07 | 35.05 |
| CDY30542 | Canola | mitochondrion | 37.64 | 34.81 |
| CDY68922 | Canola | cytosol, mitochondrion | 19.94 | 34.13 |
| CDX78221 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.39 | 31.09 |
| CDY32828 | Canola | nucleus | 32.3 | 27.58 |
| CDX95073 | Canola | golgi, vacuole | 32.02 | 27.4 |
| CDY35686 | Canola | endoplasmic reticulum, golgi | 42.42 | 26.63 |
| CDY68993 | Canola | plasma membrane | 12.36 | 23.53 |
| CDY71255 | Canola | cytosol | 17.42 | 19.75 |
| CDY41305 | Canola | cytosol, nucleus, plastid | 27.25 | 18.65 |
| CDY10412 | Canola | cytosol | 27.53 | 18.6 |
| CDY22195 | Canola | cytosol, nucleus, plastid | 26.97 | 18.53 |
| CDX70335 | Canola | cytosol | 26.97 | 18.22 |
| CDX77120 | Canola | extracellular | 10.39 | 10.31 |
Protein Annotations
| EnsemblPlants:CDY65628 | EnsemblPlantsGene:GSBRNA2T00046943001 | Gene3D:3.40.50.1820 | GO:A0A078JDC4 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_1 | InterPro:IPR029058 | PANTHER:PTHR10992 | PANTHER:PTHR10992:SF740 |
| PFAM:PF12697 | ProteinID:CDY65628 | ProteinID:CDY65628.1 | SEG:seg | SUPFAM:SSF53474 | TMHMM:TMhelix |
| UniParc:UPI0004EDE86D | UniProt:A0A078JDC4 | MapMan:35.2 | : | : | : |
Description
BnaC03g74860DBnaC03g74860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDC4]
Coordinates
chrLK034867:-:14652..15999
Molecular Weight (calculated)
40818.0 Da
IEP (calculated)
7.034
GRAVY (calculated)
-0.173
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: METDRESMSG GGRRTHTKFS FGVVRLVLSV GVLACVYQSV QPPPPKMFTA VTSPRIKLRD GRHLAYKELG APREEAKFKM IYIHGFDSCM HDSFFFHNLS
101: PALLEELKIC IVSFDRPGYG ESDPDPNRTP RSIAFDIEEL ADGLGLGPKF SVIGFSMGGQ IIWSCLHYIP HRLAGAAMVA PVVNYWWRNL PAKLSKEALS
201: LMLPRDQWML RVAHYAPWLT FWWNTQRWFS IASYISCDPS ILSFQDKEIF SRLGFNDLNQ AYARKQGEYE SLHRDLMIGY GHWEFDPLDV QNPFKNSNGS
301: VHLWHGDEDM FVPVSLQRFI ISKLPWVRYH EVTASGHFFP SLMVDEIVKT LFVGED
101: PALLEELKIC IVSFDRPGYG ESDPDPNRTP RSIAFDIEEL ADGLGLGPKF SVIGFSMGGQ IIWSCLHYIP HRLAGAAMVA PVVNYWWRNL PAKLSKEALS
201: LMLPRDQWML RVAHYAPWLT FWWNTQRWFS IASYISCDPS ILSFQDKEIF SRLGFNDLNQ AYARKQGEYE SLHRDLMIGY GHWEFDPLDV QNPFKNSNGS
301: VHLWHGDEDM FVPVSLQRFI ISKLPWVRYH EVTASGHFFP SLMVDEIVKT LFVGED
001: MAIGPSSVII IVGIILALTY QSILKPPPPN LCGSPGGPPI TAPRIKLRDG RHLAYKEYGL PREKAKHKIV FIHGSDSCRH DAVFATLLSP DLVQERGVYM
101: VSFDKPGYGE SDPDPIRTPK SLALDIEELA DQLSLGSKFY VIGKSMGGQA AWGCLKYTPH RLAGVTLVAP VVNYYWRNLP LNISTEGFNL QQKRDQWAVR
201: VAHYAPWLIY WWNTQNWFPG SSVVNRDGGV LSQPDKDIIL KLGSSRKPHL AEVRQQGIHE SINRDMIVGF GNWEFDPLEL ENPFLNREGS VHLWQGDEDM
301: LVPVTLQRYI ADKLPWLHYH EVAGGGHFFP LAKGVVDEIV KTALNH
101: VSFDKPGYGE SDPDPIRTPK SLALDIEELA DQLSLGSKFY VIGKSMGGQA AWGCLKYTPH RLAGVTLVAP VVNYYWRNLP LNISTEGFNL QQKRDQWAVR
201: VAHYAPWLIY WWNTQNWFPG SSVVNRDGGV LSQPDKDIIL KLGSSRKPHL AEVRQQGIHE SINRDMIVGF GNWEFDPLEL ENPFLNREGS VHLWQGDEDM
301: LVPVTLQRYI ADKLPWLHYH EVAGGGHFFP LAKGVVDEIV KTALNH
Arabidopsis Description
Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C915]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.